- Probe CUST_1408_PI390587928
- Source Contig U35_42011
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1408_PI390587928 | Hv_44K_v2 | TGATCAAATGGTTGAAGAGGCAAATGCTGTGCTTTTCACCTTTGGGTCATACCGTCTAGG | 555 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364339 | 3295 | 2e-24 | 893 - 952 | 100 | 60 / 60 | plus | ABC06648 |
| MLOC | MLOC_32341.3 | 3970 | 2e-24 | 3165 - 3224 | 100 | 60 / 60 | minus | ABC06648 |
| MLOC | MLOC_32341.1 | 3351 | 2e-24 | 2555 - 2614 | 100 | 60 / 60 | minus | ABC06648 |
| MLOC | MLOC_32341.2 | 3255 | 2e-24 | 2459 - 2518 | 100 | 60 / 60 | minus | ABC06648 |
| JLOC1 | JLOC1_21116.6 | 3195 | 8e-25 | 747 - 806 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_21116.5 | 3993 | 8e-25 | 735 - 794 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_21116.4 | 3162 | 8e-25 | 727 - 786 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_21116.2 | 2954 | 8e-25 | 758 - 817 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_21116.1 | 3731 | 8e-25 | 712 - 771 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37356 | 680 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06649 | 1429 | 3e-25 | 275 - 334 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42011 | 680 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14125 | 1429 | 3e-25 | 275 - 334 | 100 | 60 / 60 | plus |
Contig Sequence (680 bp)
>U35_42011 680 Hv_44K_v2 GTGATGAAGGTTTCCGCGTCCTTCTTGTTTGGACCCGTCTATCGCACGACCCCCCTGCTC GTGTCCGACTAGTACTCGTGCTTCCTTTGAGGGTCAATATAGAGGTGGCGGTCGTGGGCT CTGGTTTCATCCGAGGCAGGTCGTGCTCTGTTCCGTTTCGTGCGAAAAGCTTCGATTTTG GGGCGGCTAGCCTCGAATTTTGTCAACCCTTTTCAGTGCTCCGAGGCGCCGATCTGTGCG ATTTAGCGTTTCCTGTTCCGTTAGATTTTGTCCTGAAGGCGGCTTGTCCGGGAGTGAGGA TTACTTGCTTGCATCATCTTAGATTAGAGGTGCTGCCGTTGTTGTGTGATAAATGGCGAC CTCTAATAAGCCAATATCACTGGCTGGGCCATTGGACGCTGATGTCCAGAGGACAGCGGA GTTGAACAAGTTTTTGGTTGAAGCCGGCCTATATGAAAGTGCCGATGAGTCTGCTAGGCG GGAGGAGGTGCTGGGGGAGCTTGACAAGATTGTAAAAGTTTGGGTGAAACAGTTAACTAG TCAGAGAGGATATACTGATCAAATGGTTGAAGAGGCAAATGCTGTGCTTTTCACCTTTGG GTCATACCGTCTAGGGGGGTAGGTGATGCCAGACCACCAGGATATAGAGCTGGTGGTTAG GGTATGGCATCGGGGTATGA
Homology of Contig U35_42011 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |