barSeed - Barley Seed Development Database

Probe CUST_14077_PI390587928

Source Contig U35_8631

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14077_PI390587928	Hv_44K_v2	GGTGGTGGGTATAATTAGTCATGTAGTAGCATCTTAGCTTTGTTATTCCGATGATTTTAA	475	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373774	2034	2e-24	1954 - 2013	100	60 / 60	plus	ABC46743
MLOC	MLOC_66366.1	1460	2e-24	1365 - 1424	100	60 / 60	plus	ABC46743
JLOC1	JLOC1_43722.1	1519	8e-25	1365 - 1424	100	60 / 60	plus
Harvest21	ABC46743	572	1e-23	40 - 100	98	60 / 61	minus	ABC46743
Harvest35	U35_8631	573	3e-25	476 - 535	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_8631 573 Hv_44K_v2
TCGGAATGAATGGAGGAAAATGGTCGCCGGCAAGCAGGCAGATCTACAACTTGAGGGATG
GCGTTTCACGCTACACCGTTCAGGTTTACCCCAATGCATGGACTGCAATCTACATGCCCC
TTGACAACGTGGGCATGTGGAACGTGAGATCGGAGACCTGGGCAAGGCAGTACCTGGGAC
AGCAGTTCTACCTCCGAGTCTGGACGCCGTCCACGTCGTGGCGCGACGAGTTCCCCATCC
CCAAGAATGCCCTCCTCTGCGGCCGAGCCGCCGGACGCCGGACAAGGCCGCTCTGATGAC
TTGGCCACATGGCCAACCCAAGTTTGTCATGAGAGGATGACACCTTGGCCTGGAGCACAA
ATACTAAACTTACCATGAGACAAAAAGGCTCACGGAAATTATGACCAGAAACCAGATTCT
CGTGCGCTTGCAATTCAACTTTTAGTGACAGCTTGATTCTTTCTACAGTTGTTTTGGTGG
TGGGTATAATTAGTCATGTAGTAGCATCTTAGCTTTGTTATTCCGATGATTTTAATAAAT
AAACAACAGTTTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8631 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32660.1	547	2e-58	protein\|monocopper oxidase, putative, expressed
Brachypodium v1_2	Bradi1g26470.1	544	1e-61
Arabidopsis v10	None