barSeed - Barley Seed Development Database

Probe CUST_14056_PI390587928

Source Contig U35_8653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14056_PI390587928	Hv_44K_v2	ATGTGCAGTCATTGTCTTCATTGTTCTCTGAAGTGGGAAAAAAGGCTGATCAACTGATCA	645	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61255.3	6438	2e-24	5497 - 5556	100	60 / 60	plus	ABC17845
MLOC	MLOC_61255.4	6169	2e-24	5148 - 5207	100	60 / 60	plus	ABC17845
MLOC	MLOC_61255.1	6697	2e-24	5730 - 5789	100	60 / 60	plus	ABC17845
MLOC	MLOC_61255.2	6391	2e-24	5424 - 5483	100	60 / 60	plus	ABC17845
JLOC1	JLOC1_40025.2	5809	8e-25	4733 - 4792	100	60 / 60	plus
JLOC1	JLOC1_40025.1	6218	8e-25	5142 - 5201	100	60 / 60	plus
Harvest21	ABC17355	705	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_8653	705	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_8653 705 Hv_44K_v2
GCTTGGATGTTGATCAAGTGGAGAATCTCATAAAGTTTTGTCCCACGAAAGAGGAAATGG
AACTTCTCAAGAACTACACCGGAGACAAGCAACATCTTGGGAAATGTGAACTGTTCTTCC
TAGAACTGATGAAAGTCCCACGAATGGAGTCAAAATTGAGAGTGTTCTCCTTCAAGATCC
AGTTTGGTTCACAGGTTGCAGATCTTGGAAAAAGTTTGAAAACCATAGATTCCTCATGCA
ATGAGATCCGAAGTTCTCTCAAGTTGAAGGAAATAATGAAGAAAATACTACTACTTGGAA
ATACGTTGAACCAGGGAACTGCTAGAGGTGCTGCAGTTGGCTTCCGGTTGGATAGTCTGC
TAAAACTTACAGATACCCGGGCAACAAACAATAAGATGACATTAATGCACTACCTCTGTA
AGGTGCTTGCTGCGAAATCACCACAGCTTTTGAACTTCTATGTGGATCTTGTTAGTTTAG
AAGCTACATCAAAGATACAACTGAAAATGTTAGCGGAAGAAATGCAAGCAGTCAGTAAAG
GGCTGGAAAAAGTTGAGCACGAGTTTAAAGCTTCAGAAAGTGATGGTCCAGTGTCAGAAA
TTTTCCGTGAGAAACTTAAAGAGTTCACTGACAATGCTGGAGCAGATGTGCAGTCATTGT
CTTCATTGTTCTCTGAAGTGGGAAAAAAGGCTGATCAACTGATCA

Homology of Contig U35_8653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g40510.1	742	3e-132	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g22717.1	1390	1e-135
Arabidopsis v10	AT5G07740.1	1649	6e-95	actin binding \| chr5:2459076-2466580 REVERSE LENGTH=1649