barSeed - Barley Seed Development Database

Probe CUST_14054_PI390587928

Source Contig U35_8656

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14054_PI390587928	Hv_44K_v2	TAATTCTGGGTTCTCTTATGAGTATCAGCTGGTGGATGTTCCTGATTATCGTGGCAGAGG	644	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57506.1	4703	2e-24	1284 - 1343	100	60 / 60	minus	ABC10943
JLOC1	JLOC1_37278.1	4830	8e-25	3084 - 3143	100	60 / 60	plus
Harvest21	ABC18018	717	3e-25	645 - 704	100	60 / 60	plus
Harvest35	U35_8656	717	3e-25	645 - 704	100	60 / 60	plus

Contig Sequence (717 bp)

>U35_8656 717 Hv_44K_v2
GTGCCAAATAAGGAGAATCCCTCTTTTGTTAAGGACCGTTTTCCATTTTCCAAGTTCTTT
ACGGATACCCCTCAGCCTGTGTTTACTGGTGAGTCCTTCGAGAAAGATATGCATGCAGCC
AACGGTTGTTTCAAACATCTTTCTACGATATTCCAAGAGCTGGAAGAGTGCAGGGCTTTT
GAGTTACTTAAGTCAACAGCTGAGCGAGCAAATTATCTAATGACTAAACAAGCTAAGATT
GTTGCCATGACTTGTACTCATGCAGCCTTGAAGAGAAGAGACTTTCTTCAATTGGGTTTC
AAATATGATAATTTACTGATGGAAGAAAGTGCACAGATATTGGAGATAGAGACTTTTATA
CCAACTCTCCTGCAACGGCAGGAAGATGGTTATGCTCGTCTCAAACGTTGCATTTTAATT
GGTGATCACCATCAGTTACCCCCTGTCGTGAAGAATATGGCTTTTCAGAAGTACAGCCAC
ATGGACCAGAGTCTCTTCACAAGGTTTGTTCGCCTTGGTGTCCCTTATATTGAACTCAAT
GCTCAGGGTCGTGCCAGACCTAGTATTGCTCAGCTTTATAATTGGAGATACAGAGAACTG
GGAGATCTGCCTTATGTACATGAGGAAGCTATATTCCATAAAGCTAATTCTGGGTTCTCT
TATGAGTATCAGCTGGTGGATGTTCCTGATTATCGTGGCAGAGGCGAGTCTGCTCCT

Homology of Contig U35_8656 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g26960.1	1582	2e-151	protein\|intron-binding protein aquarius, putative, expressed
Brachypodium v1_2	Bradi1g60890.1	1566	7e-158
Arabidopsis v10	AT2G38770.1	1509	4e-139	\| Symbols: EMB2765 \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:16203185-16210253 REVERSE LENGTH=1509