barSeed - Barley Seed Development Database

Probe CUST_14052_PI390587928

Source Contig U35_8658

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14052_PI390587928	Hv_44K_v2	TCTCTTCATGGAATGGATTAGTCTGTAAATTCAGGCAGGCGTAAGCGTCAACATTGAAAT	731	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.093	1.223	1.163	1.150	0.526	0.543
Raw	215.599	388.404	312.998	494.232	78.732	87.920

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58711.2	1531	7e-23	1462 - 1518	100	57 / 57	plus	None
JLOC1	JLOC1_38164.2	3642	1e-22	3471 - 3526	100	56 / 56	plus
Harvest35	U35_8658	794	3e-25	732 - 791	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_8658 794 Hv_44K_v2
GCGAGACGTTCGCTGCACACCGGTGTGTGCTCGCAGCCCGGTCTAATGTCTTCATGGCAC
AGCTATTTGGCCCCATGAAGGAGGGCACCGCAACGTCCAGCGTCATACAGATCAAAGACA
TGGAAGCAAAAGTGTTCAGGGCTCTGCTTAGCTTNATCTACACGGATTCACTCCCCACGA
TGGAGAAGGACAGCATGGAGGAGGATGAAATGTCGGAAGTTATGGATGAAGGACGAGAAG
AAGCAGCAGAGTTTGAAATGTGGCTGCAATGGTTGCAAGACTTGTTTGTGGCGGCAGACA
GATACGATCTCCAACAGCTTAAGTTAATCTGTGAAAAGCAGTTGTCCGAGCACATATGTG
TGAGCACGGTGACGTCCACACTTGCTCTAGCCGAGCAGCACTGCTGTCACGGATTAAAGG
AGGCGTGCTTGAAGTTTATCCAAGTCCAGTCTCCCTCGTGCTTACAAGCAATAATGGCAA
CTAATGGCTGGGATCATGTATCTGCGACCTATCCCTGGGTTGTGAAGGAGCTCATTGCCA
AGCTTGCTTCGAACCAGCGAAAGTAACACCCTGTATATGGTAGGCATGCTCCTTAACACC
TAAAGTGGTGCTCTTAGTCTTATGCATATACGGTATCCTCCTTTAGAGAGGACGTAGTCG
GTGTGTCTCGTCATGTAATTTGCCTATATGCTGAATATCAATTAAAAAAAATGCAACATA
TGGGCAAGTTGTCTCTTCATGGAATGGATTAGTCTGTAAATTCAGGCAGGCGTAAGCGTC
AACATTGAAATGCA

Homology of Contig U35_8658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None