barSeed - Barley Seed Development Database

Probe CUST_14051_PI390587928

Source Contig U35_8659

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14051_PI390587928	Hv_44K_v2	GAGCCACCAAATTAAGATTTTGTATGGAAGTGTGGAGCAGTATATGTTTTACTGTTGAAA	471	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	22.483	2.380	1.048	1.143	0.302	0.244
Raw	548.882	89.969	37.029	57.661	4.463	3.230

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC22399	544	3e-25	471 - 530	100	60 / 60	plus	ABC22399
Harvest35	U35_8659	545	3e-25	472 - 531	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_8659 545 Hv_44K_v2
GGCCACATCAGCATCATACTTGCTGCCTTCGTAAGCAAAAAAAGATGAGGACTGGTCAGA
TTCTGTTGGTCGCGCTCGCCCTTCTGCTGCTTTCTTCAGATCGCATGCCGGCGAAGGTCT
CGGCGGGGTTTGCAGGCAACGCTTGTGAATCGTATATTCTGTATCCGGACAAGCAGTGCG
ATCCGGCCAAGTGCAAGACGGACTGCGAGAAGAAGGTCCAGGGAGGCGTCGGCACCTGCT
ACGGCCCTCCTTACTATAAAGGATGTGCTTGCCAGTACTGCCCGCCTACCCTACCCAGGA
AAATGAACCAGATGAACTAGCTAGCTAAGCTGGATCTCGATACGTCGAACCATGTGCTTG
CATGCGTGTGTGCGTGCATGCTAGCAATTTTTGTAGAAACATAGTAACGACGGCAACCGA
TGGAATGGTGTGGTATTGCCTCGCGGTTTTACCGTCTATAATCTCTTCAATGAGCCACCA
AATTAAGATTTTGTATGGAAGTGTGGAGCAGTATATGTTTTACTGTTGAAAAAAAAAAAA
AAAAA

Homology of Contig U35_8659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None