barSeed - Barley Seed Development Database

Probe CUST_14045_PI390587928

Source Contig U35_8665

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14045_PI390587928	Hv_44K_v2	CAACTTCGACACTTGCTGGTGACTTGGCTGAAGTAAGAGCCATCAAACAAGTCTTCAAGA	1224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357630	1777	2e-24	1197 - 1256	100	60 / 60	plus	ABC06642 ABC18583 ABC49401
MLOC	MLOC_81646.3	285	2e-24	34 - 93	100	60 / 60	minus	ABC18583
MLOC	MLOC_81646.1	598	2e-24	486 - 545	100	60 / 60	minus	ABC18583
MLOC	MLOC_81646.2	549	2e-24	468 - 527	100	60 / 60	minus	ABC18583
JLOC1	JLOC1_54305.1	681	8e-25	94 - 153	100	60 / 60	plus
Harvest21	ABC18583	1830	3e-25	1225 - 1284	100	60 / 60	plus	ABC18583
Harvest35	U35_8665	1830	3e-25	1225 - 1284	100	60 / 60	plus

Contig Sequence (1830 bp)

>U35_8665 1830 Hv_44K_v2
CCACAATAAACCTCTCCCTCCAAAAATCCATCCATCCATCTTTCCGCTGTGTCCGGCACC
GCCACCCTCGCCGCGCGGCGCCTCTGCCACCTCCTCCTCCTCCGCCGCACCGCCTGTTTA
ACCGCCTCACTCGCGCCCCCGCGGGCCCGTCCGCAAGCTCCGCCATGCACGCCCACGCCG
CCCACGCCCTCGGCCTCCGCGTCCCTCCCCCCGCGTTCCCCCGCCGCCGCGCTCGCCCGC
GCCGGCGCCCCGCCGCGGCCGTCCTTGCCACCTCGGCGGCGCCTCAGAGGGAGACGGACC
CCAGGAAGCGGGTGGTGATCACGGGGATGGGGCTGGCGTCGGTGTTCGGGAGCGACGTGG
ACACATTCTACGACCGGCTCCTGGCCGGGGAGAGCGGCGTCGGGCCGATCGACCGGTTCG
ACGCCAGCAGTTTCCCCACGAGGTTCGCCGGGCAGATACGGGGGTTCTCGTCGGAGGGGT
ACATCGACGGCAAGAACGACCGGAGGCTCGACGACTGCATCCGGTACTGCATCCTCAGCG
GCAAGAAGGCGCTCGAGAGTGCCGGGCTGGGCGCAGGCTCCGACGCGCACGTCAAGCTTG
ATGTGGGGCGGGCTGGTGTTCTTGTGGGGACTGGCATGGGTGGCCTTTCAGTATTCTCCG
ATGGTGTTCAGAACCTTATTGAGAAGGGATACAGAAAAATTTCACCTTTCTTTATCCCAT
ATGCTATAACTAATATGGGTTCAGCCTTGCTTGCCATAGATGTTGGTTTCATGGGCCCCA
ACTACTCAATTTCAACTGCGTGTGCAACCTCCAACTACTGCTTTTATGCTGCCGCAAACC
ATATTCGTCGTGGTGAAGCTGATATCATCGTCGCTGGTGGAACTGAAGCTGCCATCATTC
CAATTGGCCTTGGAGGTTTTGTAGCGTGTAGAGCACTATCACAAAGGAATGATGACCCAA
TAACTGCATGTAGGCCATGGGATAAAGAGCGAGATGGCTTTGTTATGGGTGAAGGTGCCG
GTGTACTGGTTATGGAGAGCCTGGAGCACGCAATGAAGCGCGATGCACCGATAATAGCTG
AATACTTGGGAGGTGCGGTCAACTGTGATGCTTACCATATGACTGATCCTAGAGCAGATG
GACTGGGTGTATCATCTTGTATCACAATGAGTCTCAGAGATGCAGGTGTTGCACCAGAGG
AGGTGAACTACATCAATGCACACGCAACTTCGACACTTGCTGGTGACTTGGCTGAAGTAA
GAGCCATCAAACAAGTCTTCAAGAATCCATCTGAGATTAAGATCAATTCTACAAAGTCCA
TGATAGGCCATTGCCTGGGTGCGGCGGGTGGGCTAGAAGCTATTGCCACTATCAAGTCCA
TAACTACAGGATGGGTGCATCCTACCATTAACCAATTTAACCCGGAGCCTGAAGTTGATT
TTGATACAGTAGCTAACGAAAAGAAGCAGCATGAAGTGAATGTTGGTATTTCTAACTCAT
TCGGATTTGGAGGGCACAATTCCGTGGTAGTATTCGCGCCATTCAAGCCGTGATACGTCT
TTGCTTCAGGGATGTATGATCCGCGACATCCTCTTGATTAGATGTTCTTAGGCTGCTTGA
ATTTAAAAGATTTTATTTCTCCTGGTGGAGCAAGTTTTGATGATTGGTAGAGTGGTGCTG
CCTTGACCTGGACACTGTTGTTCATATGATAATTCTTTCGGGTGCATCCCGCGTGTACCA
AGTTGTAGAAAATCTGGAATGATGTAAAGGATCCTTCAGTATTACGTATGAATTTGGTAC
TCCATAGTTCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8665 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g36800.1	463	protein\|3-oxoacyl-synthase, putative, expressed
Brachypodium v1_2	Bradi5g11060.2	463
Arabidopsis v10	AT5G46290.3	489	\| Symbols: KASI \| 3-ketoacyl-acyl carrier protein synthase I \| chr5:18774439-18776629 REVERSE LENGTH=489