barSeed - Barley Seed Development Database

Probe CUST_14030_PI390587928

Source Contig U35_8680

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14030_PI390587928	Hv_44K_v2	CATTGCAGCTGCGTATTGCAATTATGTACACAATTGTTTACACAATCGTAGTAATGATTG	707	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356149	1768	2e-24	1609 - 1668	100	60 / 60	plus	ABC12521 ABC18990
MLOC	MLOC_22627.1	1660	2e-24	1538 - 1597	100	60 / 60	plus	ABC18990
JLOC1	JLOC1_15678.1	791	8e-25	671 - 730	100	60 / 60	plus
Harvest21	ABC18990	843	3e-25	708 - 767	100	60 / 60	plus	ABC18990
Harvest35	U35_8680	843	3e-25	708 - 767	100	60 / 60	plus

Contig Sequence (843 bp)

>U35_8680 843 Hv_44K_v2
GCCTTTTACCATGGGAGCCATCAAGTGTCTATTAGTGGACCTGTTTAGTGCTGGGAGCGA
GACGTCGGCGACGACGCTCGCCTGGGCCATGTCGGAGCTGATGAGGAACCCAGGCGCAAT
GGCGAAAGCACAAGCCGAAGTACGTAACAACCTACAAGGGAAGCCAAGGGTGACCGAGGA
CGACCTGGCCGACCTCAAGTACATGAGGTTGGTCATCAAGGAGACGCTCCGGCTGCACAC
GTCGGTGCCGCTGCTGCTGCCGCGGGAGCCCACCGAGGCGTGCAAGGTCCTCGGGTACGA
CGTGCCCAAGGGCGCCACCGTGTTCGTGAACGCGTGGGCGATCTGCAGGGACCCCAAGCA
CTGGGACGCCGCGGAGGAGTTCAGGCCGGAGCGGTTCGAGTCCGGCGAAGTGGACTTCAA
GGGGACCAACTTCGAGTACACGCCGTTCGGGGCGGGCCGGAGGATCTGCCCCGGGATGCT
GTTCGCGCACGCTAGCATGGAGCTCGCCCTCGCCTCCCTTCTCTACCACTTCGACTGGGA
GCTTCCCGCCGGAGGGGAGTTGGACATGGAGGAGGAGATGGGCATCGCCGTCGGCCGGAA
GAACGACCTCTGCCTACATGCCAAAGTCGTTGTGCCGGTTAATTGACGCCTGCTTCAAAC
ACTTCGTGGGCAGTGGATCTGACGAACCAGCTTCTCGCTGGATCCAACATTGCAGCTGCG
TATTGCAATTATGTACACAATTGTTTACACAATCGTAGTAATGATTGTATTGTGCTGTTT
TTGTGAATTATGGAAAAAATCTATGATATTATTTGTATTGATCAGCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_8680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09200.1	520	7e-105	protein\|cytochrome P450 71D10, putative, expressed
Brachypodium v1_2	Bradi3g06240.1	511	1e-111
Arabidopsis v10	AT3G26210.1	501	1e-64	\| Symbols: CYP71B23 \| cytochrome P450, family 71, subfamily B, polypeptide 23 \| chr3:9593329-9595202 REVERSE LENGTH=501