barSeed - Barley Seed Development Database

Probe CUST_1402_PI390587928

Source Contig U35_42017

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1402_PI390587928	Hv_44K_v2	TATATGACAAAGAAACAGGTTGCATCGAACCTTCTGGCCATGTCCTCCCAAGCATCAAGA	254	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37423.1	3855	2e-24	2891 - 2950	100	60 / 60	plus	ABC23391
JLOC1	JLOC1_24236.1	3780	8e-25	2728 - 2787	100	60 / 60	plus
Harvest21	ABC37362	518	3e-25	255 - 314	100	60 / 60	plus
Harvest35	U35_42017	518	3e-25	255 - 314	100	60 / 60	plus

Contig Sequence (518 bp)

>U35_42017 518 Hv_44K_v2
GGTTGGGAAAACTGTGGATGAAAAATCTGGCCCAAAATCCGAGCAAGGGTATTCGTCGCC
TGAAGGATGGGAAAGAGAGAGTTGCCAGTTGCAGCGCCCTGATGCTCAGAAAGGGGAAGG
CGATGAATTTCACATTCAGACAAGTAACTATAGTGGCAGCGGCGATCACACCTCTTATGG
TGTGAATGTCACACATCATATTAATTCTCAAGGAACACAAGGACCATTATATCCCACCGG
TGATGTCAGTGCTTTATATGACAAAGAAACAGGTTGCATCGAACCTTCTGGCCATGTCCT
CCCAAGCATCAAGACTACCAGGGACCAAATAGTGGGAAGGAACTCACCACCCGCGCAGCA
AGCAGATATTGATATGTTTGACGACCGCGATGCCAGGGAGCATACTCATCCTTCCACCTC
TGGTATGACAGACTCTTCTAGCGGCAGTGCATCAAGCCACCCTACATTCAAAAAGAACCC
AGCACGTCCGCTTAAAGACAACAGCAGCCCCGCTCTTA

Homology of Contig U35_42017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g23300.1	954	1e-59
Arabidopsis v10	None