barSeed - Barley Seed Development Database

Probe CUST_14029_PI390587928

Source Contig U35_8681

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14029_PI390587928	Hv_44K_v2	AAATAAACATTGATTGAATTTCCTTCCTCCCAATGTGGTTCAGCATATTTACCCCGCAAA	591	GeneList: red MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.344	1.737	1.329	0.685	0.201	0.201
Raw	842.800	1655.753	1144.059	933.000	95.146	103.934

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70877.1	1948	7e-23	1892 - 1948	100	57 / 57	plus	ABC16702 ABC47766
JLOC1	JLOC1_47056.1	1989	8e-25	1817 - 1876	100	60 / 60	plus
Harvest21	ABC16702	468	3e-25	395 - 454	100	60 / 60	plus	ABC16702
Harvest21	ABC47766	665	1e-23	15 - 74	98	59 / 60	minus	ABC47766
Harvest35	U35_8681	665	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_8681 665 Hv_44K_v2
CTCAAGTTCCAGCCGTCGATGCTGGCGGCGGCGGCCATCTACACCGCGCAATGCACGCTG
CACGGGTGCATGTCCTGGAACAAGTGCTGTGAACTCCACACAAAATATTCTGAACAACAG
CTCAAGGAGTGCAGCACGATGATGGTGGAGCTGCACCAGGGCGCGGCGGGCGGGAAGCTC
ACCGGGGTGCACCGCAAGTACAGCACCTTCAGGTACGGGTGCGCCGCCAAGTCGGAGCCC
GCCGCCTTCCTGCTGGACGCCAGGGCCTGACCGACAACTTACGTCGCCGTGTCCCGTAAC
AAAACCGCTAAAGAAGAAGAGGTGGTGGTGTACATTGAGGGTGCTCTGTTGTTCTCTGAT
GAGATTTACACCAAGGAAGAAAGGGAGACCAACGTTTCGCTGTTGGCCGCGTCGCGTGAG
TTTTTTACTTGCTCTCTCGGCATAACTTAACATCGATCCTGTCCGAGTTGAGTCGAGTTG
CGTTGTGTGTTGTTGTTGATGGGTTCTTCCAATTACATGTGTTGGAAATGTGTTGTGTAT
TTAATTCTTGGGTTTGTTTGTGCGATGATGACTGCCTGCAAAACAACTTGCAAATAAACA
TTGATTGAATTTCCTTCCTCCCAATGTGGTTCAGCATATTTACCCCGCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_8681 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None