barSeed - Barley Seed Development Database

Probe CUST_14028_PI390587928

Source Contig U35_8682

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14028_PI390587928	Hv_44K_v2	TACTCCACAGCCAGCTCCAGTGCAATTAATTAATTAATCAGCTGTTTGGTGCTACGTGCG	91	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251324.1	2066	2e-24	100 - 159	100	60 / 60	plus	ABC30512
Harvest21	ABC17004	570	3e-25	92 - 151	100	60 / 60	plus
Harvest35	U35_8682	639	3e-25	92 - 151	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_8682 639 Hv_44K_v2
CACACATACGCCACACCAGCCATTGCTCCATCGAACGACAAGAGAGTAGAGACACACATA
CTGCAACCCAGTGGTTGGCTTCTTCCTGCTTTACTCCACAGCCAGCTCCAGTGCAATTAA
TTAATTAATCAGCTGTTTGGTGCTACGTGCGCCTACCGCCGGCACGATATGGCACCGTCG
GCGAGGCCACCGGTGGCCGCCGCCGCCGCCGTGCTCTGCTTGTGGCTGCTGGTGGCCGTG
GCAGAGGCCAAGGTGCACCACTACAAGTGGGACATCTCGTACCAGTTAAAGTCCCCCGAC
TGCTTCGAGAAGCTCGCCGTGACCGTCAACGGCGAGGCTCCCGGCCCGACCATCCACGCG
ACGCAGGGCGACACCATCGTCGTCGACGTCCACAACAAGCTCGAGACGGAGAACACCGCC
ATCCACTGGCACGGCATCCGCCAGATTGACACGCCGTGGGCCGACGGCGTCTCCGGCGTC
ACGCAGTGCCCCATCCTTCCCGGCGAAACCTTCACCTACAAATTCGTCGTCGACAGGCCT
GGCACGTACCTGTACCATGCGCACTACAGGATGCAACGCGTGGCGGGGCTCAACGGCATG
ATCGTGGTCAAGGTGCCGGACGGCATCGTGGAGCCCTTT

Homology of Contig U35_8682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32952.1	575	3e-73	protein\|L-ascorbate oxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g34690.1	581	7e-73
Arabidopsis v10	AT4G39830.1	582	3e-59	Cupredoxin superfamily protein \| chr4:18479103-18481184 FORWARD LENGTH=582