barSeed - Barley Seed Development Database

Probe CUST_14024_PI390587928

Source Contig U35_8686

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14024_PI390587928	Hv_44K_v2	ATTTATCTGATACAAGCTCTCACCGCCACCCTTTTGCCCTGTTTCTGTTTCAGAGTTCAG	382	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81456.1	3594	2e-24	421 - 480	100	60 / 60	minus	ABC04846 ABC11899 ABC11930 ABC17772
Harvest21	ABC17772	752	3e-25	311 - 370	100	60 / 60	minus	ABC17772
Harvest35	U35_8686	752	3e-25	383 - 442	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_8686 752 Hv_44K_v2
GAAATAAACTTGTTCCACCATCCTCTGCCTTTAGTAGGATTTCTCTACCGTCCATCTTAT
ACAAGTGTTTTCTTGCAATCTCGTGTTCTTGTTCCTCAGCTGTGCCCATCAAGTATATGT
GCTTGGAGTTTATATGCTGCAAGGCTAACTCTATGCAGTAATGTAAATGAAGTGTGCAGT
GGCTCGGTGATTTAGATTGTTGGCTTAGAAAATCTGGGAGTGTAAGCAGAAGTTGTTAAC
AACAATGGAATTTCTTTGACCGATTAATATCCTTGTGAGTTATGATATTGGATTGCACTC
AATCCTTTCTGCTTCTTCTTAGAATTTAATTTAGAAACAAACTTGCTCCACCATCCCCAG
ACTTCATCAAGATTTTTTTAACATTTATCTGATACAAGCTCTCACCGCCACCCTTTTGCC
CTGTTTCTGTTTCAGAGTTCAGAAGCAAAAACGCAGCCCGGAAGCCAGCATCAGGCAAGA
AGCAAGCTGAAAAGAAGAGGAAACTGGATAAAGAGGCAGTGCCTGAAGAGGAAAATGGAG
CGGCCGATGAAACCAACGCGGCCGAGGATTAGTTTTTCCGACCTTGTGCTAGGCTGAATC
TGAATCACAATAGTAGGCGTACTTCCTTAGCAGTACGCCCCTTGTGCTCTGTTTCGCGGA
ATCTCTAGATGTAGAACTGTCGTGTACTTGATATCATGATGTAGGCTCTGTTTCTGTTCC
AAACATTGTCATCTATGCTAGCTTAAATTACG

Homology of Contig U35_8686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None