barSeed - Barley Seed Development Database

Probe CUST_14019_PI390587928

Source Contig U35_8692

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14019_PI390587928	Hv_44K_v2	ATAATACCGCTTGTCCATTTTGCCAAGAATGCCCGAACTGTCTTGAGACTATTGGAGGTC	1417	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.040	1.067	1.175	1.122	0.371	0.282
Raw	62.935	108.539	98.198	153.908	16.681	14.336

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60261.1	2467	7e-23	1607 - 1666	98	59 / 60	plus	ABC16933
MLOC	MLOC_60261.4	2331	7e-23	1665 - 1724	98	59 / 60	plus	ABC16933
MLOC	MLOC_60261.2	2171	7e-23	1598 - 1657	98	59 / 60	plus	ABC16933
MLOC	MLOC_60261.3	2282	7e-23	1598 - 1657	98	59 / 60	plus	ABC16933
JLOC1	JLOC1_39276.2	2245	4e-23	1532 - 1591	98	59 / 60	plus
JLOC1	JLOC1_39276.1	2174	4e-23	1572 - 1631	98	59 / 60	plus
Harvest21	ABC16933	1503	3e-25	27 - 86	100	60 / 60	minus	ABC16933
Harvest35	U35_8692	1503	3e-25	1418 - 1477	100	60 / 60	plus

Contig Sequence (1503 bp)

>U35_8692 1503 Hv_44K_v2
TCACTAAAGGGAACGCAAATTATGTGTGCCGGACGGACGGGCTGGACGAGGTGCTGCGGC
TGGTGGACGCGGTGCACCGTCGGGAGGGCTTGATCAACAAGTCGGTTGTCGCGGCGATGG
TTGTCGATGGTCTGTGTCGGGAGCGGAGGATAGAGGATGCTTGGCGGGCTCTGGAGGATA
TGAGGTTACGTGGATGGAAGCCGGATTTTGTGGCGTACAGGATTGTGTCCGAGGGGTTCA
GGATAGCAGAAAGGGCAGAGGAGGAAGGGAGGATCTTGAAGCAGAAGAGGAAGCTCGGTG
TTGCACCAAGGAAGGTGGACTACAGAGAGGTTTTGCTTGCGTTGGTGTCCGACAGGCAGA
TCTCTGACGCGAAGGAGATGGCCGAGGCGATTGTATTAGGCGATTTCCCAATTGATGACG
ATGTGTTGAATCTCTTGGTTTGCTCGGTGTCCGAGGTTGATGCTGATGCTGCCATTATGT
TCTGCAAGTCCATGATAGGCAAGGGGAGATTGCCAAGTATAGAGATGCTCGTACAACTTT
GCGAGAGCCTTTGCAAGAATGGCAAGGGCAATGAGATGTGGGAGATGTTTAGAGTGCTTT
TGGATAAGGGCTATTGCACGAGTGAGAGGGAGTATCATTTGGTGGTGTCATTCTTGGGCA
AGGCAGGGAAGGTCAGAGAGGCATATGATGTGATAAAGGAGATAAAAAGGAAGAAGCTAG
ATCCTGGCATTTCATCATACAATTCTCTCATGGTAGCACTCTGCAGAAATGACCTCCTTA
GGCCTGCTAAGAAGCTGTGGGATGAGATGTTCACCAGTGGGTCTAGTCCAAATCTGCAGA
CCTACAATATACTTATAACAAAATTTGCAGATATTGGTGAAAGTGAACAAGTCCAACAGC
TGTTTGATCACATGGTCCAGAAAGGAGTGACCCCAGATAGTACAACATACACATCAGTCA
TTACTATGTTGTGCCAAGAAAACAAATATGAACAGGCTGAGGAGATCTTCAACAAATCTG
TAGCGCAGGATCCTAAACTAGCTAGTTCAGTGTTAACTGTCTTTATTATTGTACTCTGTA
AACAAGGTGGCTTCAAAGCAGCATTGGGTGTTATGTCAAGTCTGCCATCCACTATTGAGA
GCTCGAATTCACATGTCATTCTGTTGAAGTGCCTAACAGATGTTGAGGAAATAGAAATGG
CTTCTGAGCACATAATGTGGATTAGACGCTACTGCAGCTCTGCTTTTCAGAATATAATGA
ATGAACTCATGGCTTCTCTTTCCACTTCTGCTAGCCTTCAACCTGTCAGGAAGTTGGTCT
GTTATTTACATTCTCAGGGGCTTGTTAATGAAGTTGGCCCATGGATGAAGTTGATAGAAG
ATGATTATGCTTGAACCATAGTTTCAATGGTCATATCATAATACCGCTTGTCCATTTTGC
CAAGAATGCCCGAACTGTCTTGAGACTATTGGAGGTCNNAACCTTGAGGCGCCATTAATG
CAG

Homology of Contig U35_8692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g56960.1	616	0.0	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g06650.1	621	0.0
Arabidopsis v10	AT5G14080.1	634	6e-110	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:4543265-4545256 REVERSE LENGTH=634