barSeed - Barley Seed Development Database

Probe CUST_14013_PI390587928

Source Contig U35_13700

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14013_PI390587928	Hv_44K_v2	CCCATGATCCTCAAGAGCATAGAGATATAGAAAAATGTGTATGTCGTTAAGTATAACACA	1644	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364622	1821	2e-24	1653 - 1712	100	60 / 60	plus	ABC03045 ABC03047
MLOC	MLOC_23018.2	1233	2e-24	45 - 104	100	60 / 60	minus	ABC03045 ABC03047
MLOC	MLOC_23018.1	1532	2e-24	102 - 161	100	60 / 60	minus	ABC03045 ABC03047
JLOC1	JLOC1_15919.1	1429	8e-25	1261 - 1320	100	60 / 60	plus
Harvest21	ABC03045	1319	3e-25	1134 - 1193	100	60 / 60	plus	ABC03045
Harvest35	U35_13700	1830	3e-25	1645 - 1704	100	60 / 60	plus

Contig Sequence (1830 bp)

>U35_13700 1830 Hv_44K_v2
GCACACACGCATTTCCCGGTCTCAAGGACTCAAGCTCACAATCACAACTTCACAAGCAGA
GCACCAGAAGCAGAGGCACCCCACCCGTCTCAATCTCTCAATCCCGAGTGACCGCCGTGC
CGGTCCACCATGGGTCTCGTCTGGATGGTGGCGGCGGCCGTGGTAGCGGTGCTGGCCTCG
TGGGCGTTCAACGCGCTGGTGCACCTCGTGTGGAGGCCGCGCGCCATCACCCGGCAGCTC
CGCGCGCAGGGCGTGGGCGGGCCGGGCTACAGGTTCTTCGCCGGCAACCTCGGCGAGATC
AAGCGGCTCCGCGACGACACCGCCGGCGCCGCGCTGGACGTCGGCGACCACGACTTCGTC
CCCATGGTCCAGCCGCACTTCCGCAAATGGATCCCCATCCACGGGCGCACGTTCCTGTAC
TGGTTCGGTGCCAGGCCGAGCCTGTGCGTGGCGGACGTGAACGTGGTGAAGCAGGTGCTC
GCCGACCGCAACGGGATGTACCCCAAGAACATCGGGAACCCCCACATCGCCCGCCTGCTC
GGCAAGGGGCTCGTGCTCACCGACGGCGACGACTGGAAGCGCCACCGCAAGGTCGTCCAC
CCCGCCTTCAACATGGACAAGCTCAAGATGATGACGGTGACCATGTCCGAATGTGCCGGG
TCAATGATGTCGGAGTGGGAGACGAAGATGGACAAGGGCGGCAGCGTGGAGATTGACCTC
AGCACCCAGTTTGAGGAGATAACCGCGGATGTCATCTCTCACACGGCATTCGGAAGCAGC
TACGAACAGGGGAAAAAGGTCTTCCTGGCGCAGAGGGAGCTTCAGTTCCTCGCCTTCTCC
ACCGTATTCAGTGTCCAAATCCCAGCATTCAGGTACCTTCCAACTGAAAAGAACCTCAAG
ATATGGAAGCTTGACAAGGAGGTGAGGACCATGCTGATGAACATCATCGAAAGCCGTCTT
GCCACCAAAGACACCATGGGCTACGGCAACGACCTGCTCGGGCTCATGCTGGAGGCGTGC
GCGGCAGAGGGTGGCCATACTCCGATTTTGAGTATGGACGAGATCATAGATGAGTGCAAG
ACATTCTTCTTTGCCGGGCATGACACCAGCTCGCACCTCCTCACATGGACCATGTTCTTG
CTGAGCACGCACCCTGAGTGGCAGGAGAAGCTCAGGGAGGAGGTGCTAAGAGAGTGTGGC
AGTGAGGTTCCCACCGGCGACATGCTCAACAAGCTGCACTTGGTCAACATGTTCCTACTG
GAAACTCTCAGGCTATACGCCCCTGTATCACTCATTCAGAGGAAGGCGGGTTCAGATCTC
GAGGTCGGTGGCATCAAAGTGCCCGAAGGCACCGTCCTAACGATCCCCATCGCGACGATC
CACCGTGACAAGGAGGTATGGGGAGAAGATGCCAACGAATTCAAGCCTATGAGGTTCGAG
AATGGAGTGGCGAGGGCCGGAAAGCATCCCAATGCCTTGTTGTCATTCTCCAGCGGGCCG
AGGTCGTGCATTGGGCAGAGCTTTGCAATGATCGAGGCCAAGGCCGTTATCGCCGTGATT
CTTCAGAGGTTTTCGTTTTCCCTATCACCTAAGTATGTCCATGCCCCGATGGATGTGATC
ACGCTGCGGCCCAAGTTTGGGCTTCCCATGATCCTCAAGAGCATAGAGATATAGAAAAAT
GTGTATGTCGTTAAGTATAACACAAGGTTTTGTATTATTTGATTGGATTTTAGTTTATGT
TATGCACTAGATAAGCTTGGAAAATTATTGATGTATAATGCATTCTATAAATATAATAAA
GTGCTTTATTAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_13700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g23570.1	520	0.0	protein\|cytochrome P450 72A1, putative, expressed
Brachypodium v1_2	Bradi1g20240.1	519	0.0
Arabidopsis v10	AT2G46960.2	519	8e-167	\| Symbols: CYP709B1 \| cytochrome P450, family 709, subfamily B, polypeptide 1 \| chr2:19292295-19294212 REVERSE LENGTH=519