- Probe CUST_14009_PI390587928
- Source Contig U35_13704
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14009_PI390587928 | Hv_44K_v2 | CTGCGTCTGCCACAATGAGCGTACTGTTTGGAGAAAATCTGTCACAACTTATAAATAAGC | 655 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69140.1 | 2103 | 2e-24 | 1875 - 1934 | 100 | 60 / 60 | plus | ABC00275 ABC00309 ABC00398 ABC00501 ABC00925 ABC01000 ABC34629 ABC37572 ABC37604 ABC37614 ABC47640 |
| JLOC1 | JLOC1_45803.2 | 1855 | 8e-25 | 1605 - 1664 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45803.1 | 2127 | 8e-25 | 1877 - 1936 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34629 | 613 | 3e-25 | 87 - 146 | 100 | 60 / 60 | minus | ABC34629 |
| Harvest21 | ABC01000 | 462 | 3e-25 | 349 - 408 | 100 | 60 / 60 | plus | ABC01000 |
| Harvest21 | ABC00851 | 2008 | 3e-25 | 88 - 147 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00309 | 625 | 3e-25 | 44 - 103 | 100 | 60 / 60 | minus | ABC00309 |
| Harvest21 | ABC00275 | 567 | 3e-25 | 430 - 489 | 100 | 60 / 60 | plus | ABC00275 |
| Harvest21 | ABC00092 | 2014 | 3e-25 | 1859 - 1918 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47640 | 503 | 6e-22 | 43 - 103 | 97 | 59 / 61 | minus | ABC47640 |
| Harvest35 | U35_38723 | 613 | 3e-25 | 87 - 146 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_13829 | 2028 | 3e-25 | 1871 - 1930 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13704 | 793 | 3e-25 | 656 - 715 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48831 | 463 | 6e-22 | 126 - 185 | 97 | 58 / 60 | minus |
Contig Sequence (793 bp)
>U35_13704 793 Hv_44K_v2 CCAACATCATCCCTGAGATGGAGGTGTGCGACTTCGACTTCGAGCCCTGCGGCTACTCCA TGAACGCCATCAACGGATCTGCCTTCTCCACCATCCATGTGACCCCCGAGGACGGCTTCA GCTACGCGAGCTATGAGGTCCAGGGCATGGACGCCTCCGCCCTGGTCTACGGCGACATCG TCAAGAGGGTCCTCCGGTGCTTCGGCCCTTCAGAGTTCTCTGTGGCGGTCACCATCTTCG GTGGCCGCGGCCACGCCGCCACCTGGGGCAAGAAGCTCGACGCCGAGGCATACGACTGCA ACAACATCGTGGAGCAGGAGCTCCCCTGCGGGGGCGTCCTCATCTACCAGAGCTTTACCG CGAATGAAGAGGTTGCTGTCTCCGCCGGGTCGCCCAGGTCCGTCTTCCACTGCTTCGAGG GCGAGAATGTGGAGAGCGGCCACCCTCTGGTCAAGGAAGGCAAGCTTGCCAACCTGCTCG CATGGCGGGCGGAGGAGGATTCTCTGGAGGAGGGCGCGGTGCTGTGCGAGTGATTTTTGC TGTCGCTGTTCCGTCTGTGGAATTCGTTCTGACTTCCGTTTGTCGTTTTGGTTACTGTGA AGCAGCCGGCCAGGCTATTGCTACTCTGAATAAACTATTAGCTCTAGGTGGTTTGCTGCG TCTGCCACAATGAGCGTACTGTTTGGAGAAAATCTGTCACAACTTATAAATAAGCATTTT TTTTTATCTAAAAAAAAAAAAAAAAACTGCATTCCTTTCTGCTCAAATAATATTTTATTT CTGAAAAAAAAAA
Homology of Contig U35_13704 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g42090.2 | 399 | 6e-89 | protein|CPuORF7 - conserved peptide uORF-containing transcript, expressed |
| Brachypodium v1_2 | Bradi5g14640.1 | 397 | 1e-104 | |
| Arabidopsis v10 | None |