barSeed - Barley Seed Development Database

Probe CUST_14008_PI390587928

Source Contig U35_13705

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14008_PI390587928	Hv_44K_v2	CAAATGTATGATTTTGTAAGAAAATCCATCACGGCGCACTTTTGGTGAATTAGATAACAC	1203	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.768	3.075	1.108	0.705	0.359	0.479
Raw	1869.790	3355.302	988.825	1044.261	176.011	261.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366063	1749	2e-24	1683 - 1742	100	60 / 60	plus	ABC03045 ABC03047 ABC47721
MLOC	MLOC_45012.1	1541	7e-23	1471 - 1530	98	59 / 60	plus	ABC03045 ABC03047 ABC47721
JLOC1	JLOC1_29211.1	1612	4e-23	1476 - 1535	98	59 / 60	plus
Harvest21	ABC03047	1819	3e-25	1656 - 1715	100	60 / 60	plus	ABC03047
Harvest35	U35_13705	1367	3e-25	1204 - 1263	100	60 / 60	plus

Contig Sequence (1367 bp)

>U35_13705 1367 Hv_44K_v2
TGACGATGACCATGTCGGACTGCGCTGGGTCAATGATGTCTGAGTGGAAGGCAAAGATGG
AGAAGGGTGGCAACATGGAGATTGAGCTGAGCAGGCAGTTTGAGGAGCTAACCGCAGATG
TGATCTCTCACACTGCATTCGGGAGCAGCTACCAACAGGGAAAAAAGGTCTTCTTGGCGC
AGAGGGAGCTCCAATTTCTTGCCTTCTCCACCGTATTTAACGTGCAAATCCCAGCATTCA
GGTAAATGCAACTTCATTTTCGTATACCATTTCAGTTCCAACCAAGACACACCATACATT
TTTACGCAACAAAAATTAATAATTCCTCCATGTATGTTTGTGAAATTACATCAGGTACCT
TCCAACTGAAAAGAACCTTAAGATATGGAAGCTTGACAAGGAGGTGAGGGGCATGCTCAT
GAACATAATCAAAACCCGTCTTGACACCAAAGACACCATGGGTTACGGCAACGACCTGCT
CGGGCTCATGCTGGAGGCATGCGCGCTAGAGCATGGGCAAAATCCTATTCTAAGCATGGA
CGAGATCATAGATGAGTGCAAGACCTTCTTCTTCGCAGGGCATGACACCAGCTCACACCT
GCTCACATGGACCATGTTCTTGCTGAGCATGCACCCGGAGTGGCAGGAGAAGCTCAGAGA
GGAGGTGCTGAGAGAGTGTGGCAATGGGGCTCCCACCGGTGACATGCTCAACAAGCTTCA
CTTGGTCAACATGTTCTTGCTGGAAACTCTCAGGTTGTACGGCCCTGTAGCGGCCATTCA
GAGAAAGGCAGGTTCAGATCTCGAGGTCGGTGGCATCAAAGTGCCCAAAGGCACAGTCAT
CACAATCCCCATCGCAACGATACATCGTGACAAGGAGGTCTGGGGTGAGGACGCCAATGA
GTTCAAGCCTATGAGGTTTGAGAATGGAGTGACACGGGCCGGAAAACACCCCAATGCCTT
GTTGTCTTTCTCAAGTGGACCCAGGTCTTGCATAGGGCAAAACTTTGCTATGATAGAGGC
CAAGGCCGTGATCGCCATGATTCTTCAGAGGTTCTCGTTCTCCCTATCACCTAAGTATGT
CCATGCCCCGATGGACGTGATCACGCTGCGACCCAAGTTTGGGCTTCCCATGATCCTTAA
GAGCCTAGAGATGTAGAGGTGTGTTGAGTACAACACAAGGTTGTTTATTTATTGGTCTTA
TCGCAAATGTATGATTTTGTAAGAAAATCCATCACGGCGCACTTTTGGTGAATTAGATAA
CACTTACATCAAAAAAAAAAAAAAAAAATTAAAGGGGAGTTGGTAGGGTCGCCTACACCT
CCTCCTCCTCCTCCGGGTTCTTTCCTCCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13705 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g23570.1	520	4e-156	protein\|cytochrome P450 72A1, putative, expressed
Brachypodium v1_2	Bradi1g20240.1	519	9e-167
Arabidopsis v10	AT2G46950.1	572	7e-100	\| Symbols: CYP709B2 \| cytochrome P450, family 709, subfamily B, polypeptide 2 \| chr2:19289466-19291541 REVERSE LENGTH=572