barSeed - Barley Seed Development Database

Probe CUST_14006_PI390587928

Source Contig U35_13707

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14006_PI390587928	Hv_44K_v2	TGGGTTCAGTAGGCTGTGTAATAGTACCATGTTCTGTTCAATGCAATCAGTTCGATTCTG	450	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15469.1	493	2e-24	169 - 228	100	60 / 60	plus	ABC00009 ABC00250 ABC27412
JLOC1	JLOC1_10614.1	384	8e-25	169 - 228	100	60 / 60	plus
Harvest21	ABC00009	531	3e-25	446 - 505	100	60 / 60	plus	ABC00009
Harvest35	U35_13707	544	3e-25	451 - 510	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_13707 544 Hv_44K_v2
CACCCGCGGCACTCACTTCTTCTCCCAAATCCAGCGACGATGTCCGGGCGCGGCAAGGGC
GGCAAGGGTCTGGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTCCTCCGCGACAACATC
CAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGAGGCGTCAAGCGCATC
TCCGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATC
CGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTC
GTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGAGGCTAGATGCGTTGC
GTAGTGGAGCAACTTGCTCGTTTGCTCTGCGTGATGTGTGCTGTGGTGGATGGGTCTACC
GATTTGGCGTGCGCCGTTGTGTTCTGTCTTTGGGTTCAGTAGGCTGTGTAATAGTACCAT
GTTCTGTTCAATGCAATCAGTTCGATTCTGAATCCTGAAAAAAAAAAAAAAAAAAAAAAA
AAAA

Homology of Contig U35_13707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g19360.1	104	5e-51
Arabidopsis v10	AT5G59970.1	103	6e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103