barSeed - Barley Seed Development Database

Probe CUST_14000_PI390587928

Source Contig U35_13713

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14000_PI390587928	Hv_44K_v2	GCATCCAATGCTCATGTAATAATAAGGGTAAAAGAAGATAATGTAGTACTACACGTCTGT	1413	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.470	2.347	0.728	0.652	1.020	0.914
Raw	32.308	26.677	7.363	9.421	4.553	4.267

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64235.1	1657	2e-24	1573 - 1632	100	60 / 60	plus	ABC01862
JLOC1	JLOC1_42160.1	1499	8e-25	1369 - 1428	100	60 / 60	plus
Harvest21	ABC01862	1501	3e-25	1414 - 1473	100	60 / 60	plus	ABC01862
Harvest35	U35_13713	1501	3e-25	1414 - 1473	100	60 / 60	plus

Contig Sequence (1501 bp)

>U35_13713 1501 Hv_44K_v2
CACAGAAGCACACTGCACCACCACACGAACCAGCAGCACTGCTCGCCCAGCTACTGCCGG
CCACTCGAGCGAGCAAGGCGCTGCTTCTGTCGGCGGCGGGTAGGTGGCGCCGTGCGTGCG
TGCGTGCGTGGGGGAGCTAGCTGGTCGGCCGGCGAGGATGATGAGGACGGTGGCGGCGGT
GGCGGTGGCCGTGCTGCTGGCGATGGCGGTGGCGGAGGCGGAGGCGGGGGAACTCAAGGT
GGGGTATTACGACAAGAGCTGCCGGGGCGTGGAGAACGTGGTGAAGTGGCACGTCGCCAG
GGCCATCAAGGCCAACCGCAAGAACGGCGCCGCCCTCGTCCGCCTCATCTTCCACGACTG
CTTCGTCAGGGGCTGTGACGCGTCGGTGCTGCTGGACCCGACGCCGGAGAACCCGCACAC
GGAGAAGACGGCGCCGATCAACATCGGGCTGGCCGCCTTCGACCTGCTCGACGACATCAA
GTCGGCGGTGGAGGACCGGTGCCCCGGCGTCGTCTCCTGCGCGGACATCCTCATCTACGC
CGCCCGCGACGCCGCCAGCCTGCTGAGCAACGGCCACGTCCACTTCGACGCCCTCGCCGG
CCGGCTGGACGGCGTGCACTCCCACGCGGCGGAGGCGCAGCAGGACCTCCCGGACTCCAC
CTTCACCATCGCCGAGCTCATCCAGAACTTCAAGCGCAAGAACTTCACCATCGAGGAGCT
GGTGATCCTGTCCGGCGCGCACGCCGTCGGGGTGGGCCACTGCTCGTCGCTCCGCGCCCG
GCTGACCGCCCCCGCCAACCAGATCCTCCCGGCGTACCGGGGCCTCCTCGCCGGGAAGTG
CGCCAAGGGGCCGGACCCCATCGTGCCCAACAACATCAGGGACGAGGACGCCGGCGACGT
GGCGGCGGCGGTGCCGGGGTTCCTCCCGAAGCTGAGGAAGGTCAAGGACTTCCTGGACAA
CAGCTACTACCACAACAACCTGGCGAGGATCGTCACCTTCAACTCCGACTGGCAGCTGCT
GACGGAGAAGGAGGCGCGCGGGCACGTGCACGAGTACGCCGACAACGGCACGCTCTGGGA
CGAGGACTTCTCCGACTCGCTCGTCAAGCTCAGCAAGCTGCCCATGCCGCACGGCAGCGA
GGGCGAGATCAGGAAGCAGTGCCGCTTCGTCAACCATCACTGAGATTTCCCGAGCTCCCA
TCACGCTGACGCTTCCCATGGGTTGAACTTGAATTCGGTCGCTCGCGTTTGATTATTCGT
TTGTTGTTATGTTTTTATTTTTGTTTTATTTTCTTCTTCGATTTGTGGGATTGATTTGTG
GAAAAATGTGCGCATGCGCCTGCGTGCGATCTGTGTAGATTTTTTTCCCGTCAAGTGTGG
TGCCTTTAAGTGGCTTGGATATCATCCATCCAGGCATCCAATGCTCATGTAATAATAAGG
GTAAAAGAAGATAATGTAGTACTACACGTCTGTTTTTTTTTGACAAAAAAAAAAAAAAAA
A

Homology of Contig U35_13713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g04380.1	343	0.0	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g38660.1	343	0.0
Arabidopsis v10	AT4G33420.1	325	3e-58	Peroxidase superfamily protein \| chr4:16084856-16086105 FORWARD LENGTH=325