barSeed - Barley Seed Development Database

Probe CUST_13_PI390587928

Source Contig U35_7858

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13_PI390587928	Hv_44K_v2	GGACCCCTGTTGAGATAGATGCTGATATATATGTATATATATTTAGTAGTAGCAGCAGAT	874	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.253	2.391	1.197	0.777	0.331	0.350
Raw	3257.623	5478.283	2353.783	2468.130	354.870	416.475

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (1013 bp)

>U35_7858 1013 Hv_44K_v2
GATCACAGTCGCGCGCCATCCAGCCACAACCAGTCCCGCCCAGCATACTCGTCAGAACAA
TGGCACCTGCTATTTTGATGCCTGGGCCACAGGGCAGCCACGGCAGGCCTGCTGGAGCAG
TACAGCTGCGTGCGGCCTCTCCTCATCTCCAGCACAGGATGCGGCCGCCACACGGCATCA
TCCACATGGACTACCAGCAGCAGCAGCAGCAGCTTCCTGTCATCCCAGGGGTTCCAGCAC
GCGGACAGTTCGTCCCCGTGTCGACGGAGAGCCTAAGGCCGGCGTTTACGCAGCCAGGCG
CCGCCGCGCTAGCCTCCATGACGACTCCGGCAGGCCCGGCTCACCAACCAACGCTGCCGT
CAGCGTCAGGCTCAGGCCCAGCTACCCCGGCGTACATTGTGCCACCTGGCTGGCATCCGG
AGGCCGTCTGGACTCCGAATCCCGTTCTCACGTTGGCCCAGCTCCAGCAGCAGGCATCGT
ACCTGAACAGGGCCATGGGCGGCAGCGGCACCTCAGCAGGTCCGGCGGCGCCAGGAGGCC
AGCAGCACGCTGGGGGCGCCCATATACCTGCCGTCCTCAACCTCCCAGGCTTGGAAGCGT
TACCGCCGCCGAGCAACAACCCATACATGCCGGCCAGGTTCGGCCTGGAGCCTGGCAGCG
GCGGCGGCGGCAACGCAGCAGGCACGGAGGTCGTGTGCCTGTCCGACGACGAAGCTTAGT
CGGTGCGCGGCTGAGAGCCGTCGGTCCGTTGTAGGCAGCCTTTTTGATTGACTTGACTTG
TCTGCTGCTGTTTGTCGTGAGCTAGGCAGCGCTTGGAAGCCGGTCTGAAGACTTTAGCAG
CAAAAAACAGCATCCTTGTAGCTGAGAGATGTATGGACCCCTGTTGAGATAGATGCTGAT
ATATATGTATATATATTTAGTAGTAGCAGCAGATTTATGAACACCAGTTAGTTGTTTATA
TAAGTGTCGCTTAATTTATTTACCGATTGCCATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None