barSeed - Barley Seed Development Database

Probe CUST_139_PI415269222

Source Contig TA35251_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_139_PI415269222	Hv_44K_v2	AATACTTGTTTTTAATCGTGCGTTCCGTGAGCATGAACATGGTGCTGGTCGCTTGCTCTT	1567	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53061.1	2930	7e-23	59 - 118	98	59 / 60	minus	ABC06481 ABC42227
MLOC	AK375962	3234	3e-21	3149 - 3208	97	58 / 60	plus	ABC06481 ABC42227
JLOC1	JLOC1_34050.1	3075	4e-23	2887 - 2946	98	59 / 60	plus

Contig Sequence (1653 bp)

>TA35251_4513 1653 Hv_44K_v2
AAGGGATACNCAGCTGCTCCGTTGCTCACCACAACTGGTCTACTCGAACAGCTTAACGTC
ACGAGAGACACCAGTGATTATCTTTGGTACATGACCAGTGTGGATGTAAGCCCCTCGGAG
AAGTCTCTACAAGGTGGCAAGCCTTTGTCCCTCACTGTGCAGTCTGCTGGCCATGCCTTG
CATATCTTTGTCAATGGACAGCTACAAGGTTCTGCTTNTGGAACCAGGGAAGATAAAAGA
ATTTCATACAAGGGTGATGTTAAACTTCGTGCCGGTACTAACAAAATTTCACTGCTGAGT
GTTGCTTGTGGGCTGCCGAATATCGGGGTGCATTATGAGACATGGAATACTGGTGTCAAT
GGCCCTGTTGTGCTTCATGGTTTGGATGAAGGTTCGCGAGATCTGACCTGGCAGACATGG
ACCTATCAGGTTGGTCTGAAAGGTGAACAAATGAACCTGAACTCCTTAGAAGGTGCAAGT
TCAGTTGAATGGATGCAAGGATCATTGATTGCACAAAACCAAATGCCATTGGCATGGTAT
AGGGCATACTTTGATACTCCAAGTGGCGATGAACCACTGGCTCTGGATATGGGTAGCATG
GGTAAGGGACAAATCTGGATAAACGGACAAAGCATTGGACGGTACTCGTTAGCATATGCA
ACTGGGGACTGCAAAGATTGCAGTTACACTGGGTCATTCCGAGCAATCAAATGTCAAGCA
GGTTGCGGTCAGCCCACACAACGTTGGTATCATGTACCAAAATCCTGGTTGCAACCGACT
AGAAATCTGTTAGTTGTTTTCGAGGAACTTGGCGGGGATACTTCGAAGATTTCCCTTGTG
AAGAGATCAGTCTCAAATGTCTGTGCTGATGTATCAGAGTTTCATCCAAGTATCAAGAAC
TGGCAAACTGAGAACTCAGGGGAAGCTAAACCTGAGTTGCGCAGGTCGAAGGTACATCTA
AGATGCGCACCTGGGCAGTCTATTTCTGCCATCAAGTTTGCAAGCTTCGGGACACCTCTT
GGGACTTGCGGAAGTTTCGAACAAGGGCAGTGCCATTCAACCAAGTCACAGACTGTTCTT
GAGAATTGCATCGGGAAGCAGAGATGCGCCGTCACCATCTCCCCCGACAACTTCGGCGGA
GACCCCTGCCCGAATGTGATGAAGAGGGTGGCGGTCGAGGCGGTATGCTCTCCTGGTACA
TAGGCAACTCCTCCGACTATACTAATTTAAAGACGACACGGCCTTGTGCGTGACCGATTG
AGCACACGGGAAGTGATCCGGAGGTGAAGTTCAACTGTAAAGTACTACCGAGTCGGCGTA
GACGTGGCTGGAGGATTTAGAAGGCCATTTGCCATTTCTAGCATTGTGATTTCAGATTAG
GATTGGTGCTCTGCTCTGTATCTCCATGAATTGTTCAAAAGCGACCAGCTGGTAGTCGAG
GCTGGTCCTGGAATGGAGTGTAGGGGGGAGTAAGGTGCAGAAGATTATTTTGCTGGTGTT
GCGGGTATGCATGGGCTGTGTGTCATCTTTCTTGAAGAAGAGAAGATGTTGTATCCTTCC
TTTTGAAAATACTTGTTTTTAATCGTGCGTTCCGTGAGCATGAACATGGTGCTGGTCGCT
TGCTCTTGGTTCTTGAGCTGTGTTTTGCTGGTG

Homology of Contig TA35251_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g06940.1	842	protein\|beta-galactosidase, putative, expressed
Brachypodium v1_2	Bradi1g74050.1	840
Arabidopsis v10	AT4G36360.1	856	\| Symbols: BGAL3 \| beta-galactosidase 3 \| chr4:17176840-17181143 REVERSE LENGTH=856