barSeed - Barley Seed Development Database

Probe CUST_13999_PI390587928

Source Contig U35_13714

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13999_PI390587928	Hv_44K_v2	GCAGTATCATCAACTAATGAATAAGTGAACTTCATATAAATCTGCTTGCGCTCATGTACT	471	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69214.1	256	2e-24	38 - 97	100	60 / 60	plus	ABC28899
JLOC1	JLOC1_45853.1	429	8e-25	249 - 308	100	60 / 60	plus
Harvest21	ABC35249	541	3e-25	472 - 531	100	60 / 60	plus
Harvest21	ABC28899	186	3e-25	70 - 129	100	60 / 60	plus	ABC28899
Harvest35	U35_13714	539	3e-25	472 - 531	100	60 / 60	plus

Contig Sequence (539 bp)

>U35_13714 539 Hv_44K_v2
CCGCAACGGAACCAACAAATCCCCAACCAATCTCGTCTCCAATCGACCCGAGGCTCGTCG
AATCCTCCTCCCCCGCCGCTTCAAGATGCAGATCTTTGTGAAGACCCTGACTGGGAAGAC
CATCACTCTGGAGGTGGAGAGCTCAGACACCATCGACAATGTCAAGGCCAAGATCCAGGA
CAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGA
TGGTCGGACCCTTGCGGACTACAACATCCAGAAGGAGTCTACCCTTCACCTGGTGCTCCG
CCTCCGTGGTGGTCAGTAATTGCCCTAGCGTTGGAAGTCCTGGGTCGTCCGGTGGGCGGT
GCCCTGTCTGTTCAATTGAACTGTTTTCTCGTTTGCGTCTGTCCTCCTGTGGTTGGTTTA
ATGAACTATAGAGTCACCGTGTTATGTGTGGTTTAAACTGTTGCTGGTACAGCAGTATCA
TCAACTAATGAATAAGTGAACTTCATATAAATCTGCTTGCGCTCATGTACTATTTAGTT

Homology of Contig U35_13714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None