barSeed - Barley Seed Development Database

Probe CUST_13994_PI390587928

Source Contig U35_5290

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13994_PI390587928	Hv_44K_v2	TGTGCTGGAGTAAGTTGGAGTTTGTTTGTTTGGTTTAGGTGAGTTTTAAGACATACAATC	1083	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.233	3.512	0.837	0.891	0.538	0.479
Raw	54.558	76.320	14.275	25.784	3.395	2.687

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248636.1	1645	2e-24	1523 - 1582	100	60 / 60	plus	ABC11270
MLOC	MLOC_24655.1	1105	2e-24	993 - 1052	100	60 / 60	plus	ABC11270
JLOC1	JLOC1_16937.1	1132	8e-25	999 - 1058	100	60 / 60	plus
Harvest21	ABC11270	1223	3e-25	1084 - 1143	100	60 / 60	plus	ABC11270
Harvest35	U35_5290	1223	3e-25	1084 - 1143	100	60 / 60	plus

Contig Sequence (1223 bp)

>U35_5290 1223 Hv_44K_v2
CCTCAAGTTCTCGGTGTTCCTAGGGAATTTGGAGTCGGGAGGCAACAAAGGGGAGAAGGC
CTTGGAGCACTCGGCCACCATCGCACTGCAGTCGCCGCTCCCGGAATACAACAGTCGTTT
CGAGTTTGGCCCGGGTCCTTCCATGATGTCTTCTGGTTATCCTTCCGCTGAGCAGTGTTA
TGGCCTACTTACCACTTACGCAATGAAATCGACGCCCGGTGGCCGATTGCTCTTGCCGCT
GAATGCAACAGCTGATGCCCCGATTTATGTGAATGCAAAGCAGTATGAAGGCATCCTTCG
CCGCCGCCGTGCTCGCGCCAAGGTGGAGCGAGAGAATCAGCTGGTGAAAGGAAGAAAACC
CTATCTTCACGAATCACGCCACCGCCACGCGATGCGCCGGGCGAGGGGCACGGGAGGGCG
CTTCCTCAACACGAAGAAAGAGGGTGGCGGCGGCAAGGACGCTCCGGGAGGCGGCAAGAG
GGCGGAATGCACCCCGCCTACGCGCTTCGCCACGTCCCCGAGCTCCGTCATCCCGCACTC
CCGGAGCAGCATCTCGAGCCTCTCCGGGTCGGAGGTGTCGAGCATGTACGACCACGACGA
CGTGGACCACTACAACAGCATCGAGCAGCTCCGGACCCCCTTCTTCACCCCGCTGCCGAT
CATCATGGACGGCGAGCACGGGGCCTCCGCCCCCTTCAAGTGGGCCACGGCCGCCGACGG
CTGCTGTGAGCTCCTCAAGGCATGACTTGAGGGGGGGTATACGCAGGCACCCAGATCAAG
AGCTGGCCATGGCCGGCTCTGGCTCCATCTGGTTGCCTGCAGGCAAATCATTCTTGGCTC
TACTGCATTGGGGCGTCCTTCCATATCACACTACCTTCTTCCCTGAAAATTCCGGTGCTG
GTTTTCAGGGATGCTGTGATGGTGGGGATCCCCATATGCCTGTAAAAAAGTATCGGAAGC
ACTAGCAGTGTACCACGGGTATGAACTCTATGGACTATGGTATCAGGTGTCTGTGTCAGA
ATAAGTATCGGATTTCAGGGTGTTGTCATGTGTTAGGGTCTGAAACTTTTGTGCTCTTGG
CAATGTGCTGGAGTAAGTTGGAGTTTGTTTGTTTGGTTTAGGTGAGTTTTAAGACATACA
ATCTATTGTACTCTCAATGTATGATTTGTAAGCTTGTCTGCATAAATGTTACCAGTTTTT
TAGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5290 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g44540.1	355	8e-79	protein\|nuclear transcription factor Y subunit, putative, expressed
Brachypodium v1_2	Bradi1g13680.1	343	7e-106
Arabidopsis v10	None