barSeed - Barley Seed Development Database

Probe CUST_13981_PI390587928

Source Contig U35_10307

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13981_PI390587928	Hv_44K_v2	CCTATGTAACTTTCCATCTTGAATTTCATAATGGCGACCATGTTCGTCAGTTCATAAAAA	492	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356959	1664	7e-23	1605 - 1661	100	57 / 57	plus	ABC03769
MLOC	MLOC_73340.1	2428	7e-23	923 - 979	100	57 / 57	plus	ABC03769
JLOC1	JLOC1_48828.1	2080	4e-23	1466 - 1522	100	57 / 57	minus
JLOC1	JLOC1_48827.1	1423	4e-23	798 - 854	100	57 / 57	plus
Harvest21	ABC03769	1867	1e-23	1327 - 1383	100	57 / 57	minus	ABC03769
Harvest35	U35_10307	564	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (564 bp)

>U35_10307 564 Hv_44K_v2
CCACGCGTCCGGGGGACACGGCGAGTGGTGCGTGGCGAAGCCGTCGGTGCCGGCAGCGAT
CGTGCAGCAGGCCATGGACTACGCGTGCGCGTCGGGCGCCGACTGCGAGTCCCTCCAGGC
CGATGGCGCCTGCTTCAAGCCGGACACCATGACGTCCCACGCCTCCTACGCCTTCAACAG
CTACTGGCAGCGCGCCAAGTCCACCGGCGCCACCTGCGACTTCGGCGGCACCGCCATGCT
CATCACCAAGGACCCAAGCTATGATAACTGCCATTACAGTGTGATGTGAAGACCAGATCT
AGATGCCATCAGTGGTTTTGGAAGCTGGACGCCATTTTCTGCTCAAGTTCGGAGGAAGTA
GTGCAGACATATATACTTGTAGGCTGTGTTCTGAGTGTGACCATGTTCATTTTGTGTATG
TATGTACGTAGCCACCTAACTTTTGCCTCCTTTTGACACATATTGTTTTGTGTAATTCAG
AATAATGCTACTCCTATGTAACTTTCCATCTTGAATTTCATAATGGCGACCATGTTCGTC
AGTTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_10307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None