barSeed - Barley Seed Development Database

Probe CUST_13978_PI390587928

Source Contig U35_10310

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13978_PI390587928	Hv_44K_v2	ATGACAAACAAAACCGTTGTGGACAAGGCTGTTGGCAAAGCACGGCGTGTATCTTTAGTT	1620	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.957	1.233	2.177	1.539	0.566	0.701
Raw	252.927	495.798	781.451	868.847	111.221	154.022

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62210.1	3315	2e-24	940 - 999	100	60 / 60	minus	ABC23204
JLOC1	JLOC1_40692.2	3308	8e-25	2323 - 2382	100	60 / 60	plus
Harvest21	ABC18625	1744	3e-25	1621 - 1680	100	60 / 60	plus
Harvest35	U35_10310	1744	3e-25	1621 - 1680	100	60 / 60	plus

Contig Sequence (1744 bp)

>U35_10310 1744 Hv_44K_v2
GCTCCCGACTGCCCTGCTGCCCTCCAGTTCCTAGGTGGGTTGGGGAACATCCTGATGGAT
AAGCACAACATCCTGATGGAGAGGTATAAACAGCAGGTGGCAAAGTGTGCCGAGGAGTGT
GCACCAAGGTTTGACGGCTTGATGAAGAAGTACACGGCGGAGTGTGCAGAGCGGCGTCGT
TTGTACAATGAACTCATCGAGCTGAGGGGAAACATCAGGGTATTCTGCCGGTGCCGCCCT
TTAAGTTCCGATGAGATCTCCCATGGGTGCTCATCAGTGGTTCAGGTTGATCCGTCCCAG
GAGATGGACCTTCAGTTTGTTCCCACGGAAAAAGAGAGGAAGACCTTTAAATTTGACCAT
GTTTTTGGACAGGCTGATGATCAAGAGGCTGTATTTGCTGAGAGCCTGCCAGTCGTGAGG
TCAGTGATGGATGGTTTCAACGTATGCATCTTTGCATATGGGCAAACTGGAACAGGGAAA
ACCTTCACTATGGAAGGTGTTCCAGAGAATAGGGGTGTCAACTACAGGGCTCTTGAAGAA
CTGTTCAGGATGTCAGAGGAGAGAAGCTCATCCGTCTCATACTCATTTGGTGTGAGTATC
TTGGAAGTCTATAATGAAAAAATCACGGACCTTCTTAATGAAAACTCTGAACAAACATCA
AAAAGGTTGGACATAAAGCAAAGTGCTGATGGGGCACAAGAGGTGCCTGGCCTGATTGAA
GCTCCAATTTCTACAATAGATGGTGTGTGGGAGAAACTGAAAGCTGGGGCTAGAAATAGA
TCTGTTGGATCAACCAGTGCCAATGAACTGAGCAGTCGCTCCCATAGCTTGGTTAGGGTC
ACCGTTACAAGTGAGCATTTGGTGACTGGGGAAAGGAGCAGAAGCCACATGTGGTTGGTT
GACCTTGCTGGAAGTGAGCGCTTGGCTAAAACTGAAGTAGAAGGAGAGAGGCTGAAGGAG
GCAAAGTTCATCAACAAATCACTCTCTGCACTGGGTGATGTTATCGCTGCCCTTGCCTCC
AAAAATGCCCACATCCCATATCGGAACTCCAAGCTAACTCATCTGCTCCAAAGCTCGTTA
GGTGGAGATTGCAAGACACTTATGTTTGTGCAGATAAGTCCAAGCTCTGCAGATTCAGGA
GAAACTCTATGCTCGTTAAATTTTGCTAGTAGAGTTCGAGCTATTGAATATGGCCCTGCT
CGTAAGCAAGTGGATCCAGCTGAAAATTTCAAGCTCAAGCAGATGGCCGAAAAACTCTGT
CATGAGGAAAAGGAAAATGCGAAGTTGAACGAAAGCTTGCAACTGATGCAACTCAAGTAT
GCTTCTCGTGAGAGTGTATTCAGAGCTCTTCAAGAAAAGATAAGGGAGACAGAGCAAGCC
TGCAGAACTCATCAGCAGCGGGCTAGAGAGCTGGAGAACGAATTAGCTAATGAGAAGAAG
GCTGCGAGGGATACGAATAAATCCACGAAGCCATCATTTGCTGCTCCTGTGAGGCAGAGA
CCACCACTTGCTCCTATGAGGCAGAGACCACCAAGCAACAACATGCCACAACCTTCAGGC
CCTTCCAGACTGAGGTTTGCTGGTAAGGGATCTTCAGCTCAGAACAAAGAGAACGTCCCT
ATGACAAACAAAACCGTTGTGGACAAGGCTGTTGGCAAAGCACGGCGTGTATCTTTAGTT
CCCACGATGCGACAGATCCCTCTCCAGCCTAAGAGGCGATCCTCGATCGCGATCCTACCA
AGCG

Homology of Contig U35_10310 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g33030.1	841	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g26100.1	863
Arabidopsis v10	AT5G27550.1	765	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:9727634-9731323 REVERSE LENGTH=765