barSeed - Barley Seed Development Database

Probe CUST_13962_PI390587928

Source Contig U35_10326

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13962_PI390587928	Hv_44K_v2	TTTTCTCTGAACCGGCATTCTTAGAACAACATTTACCGACAGAGAAGCACCATGTGGGTA	847	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361366	1629	2e-24	948 - 1007	100	60 / 60	plus	ABC21330
MLOC	MLOC_16399.2	1585	2e-24	370 - 429	100	60 / 60	plus	ABC21330 ABC39053
MLOC	MLOC_16399.1	1131	2e-24	375 - 434	100	60 / 60	plus	ABC21330
JLOC1	JLOC1_11287.1	1054	8e-25	370 - 429	100	60 / 60	plus
Harvest21	ABC21330	928	3e-25	848 - 907	100	60 / 60	plus	ABC21330
Harvest35	U35_10326	928	3e-25	848 - 907	100	60 / 60	plus

Contig Sequence (928 bp)

>U35_10326 928 Hv_44K_v2
GCCCTCTCCCTCGTCTTCCCCCGCTCCCGTTCCCGATGCTCAGGCGCCCGTCGCCCCCGC
GCCGATGCCGACGAGGCCATGGGAGGAGGCCCTGGACGCAGCACAACGGGCGTTCTGCCT
GCCCCTCGCCGGCCGCGTCCTCGCCGCCGCCGGCACCGGAAACGCCGCCGTATCCCCTGC
AGGTGTCCACGCCGCGCTCTCCCTCGCGGCTCCGGCGCGCGTGGTGCGACGCGGAGGCAG
CTGCTCGGCACGCTGGGCTGCGGCGGCGGCGGCAAGGGCGCGGCGGCTGACGCGGCCAAT
GTGGCGTCACGTGTGGTCAAGCGCGTGCTCAAGGACCGGGCGAAGTCTGGTGGACCACGG
CTCGCGTTCGCCTGCGGTGTGTGGGCCGACGCATCAACCACGCTGTCGCCCGAGTTCGTC
GAGGCTGCGGGTGGCCTGTACTGCTCAGCGGCCAAGACGGTCGATTTCAGGAGCACGCCA
GAAGATGCTGCTGAGAAAATTAACTCATGGGTCAACAAGTCCACCAGACAGACCATTACC
TCACTTCTTCCAGATGGATTAGTTGACCAGAATACAGGGCTTGTACTTGGGAGTGCACTG
TATTTTAAAGGCAGATGGCTGGATAAGACTGATATAGGGAAGACTGCTGAACAAAAGTTC
TACTGTCTGGATGGTACACATGTCCTGGTGCCTTTTGTAGAGTATGACAGAACTCGTCTT
TTTGCTGCACATGACGGATTCAAAGTTATTAAGCTTCCTTATAAGCAAGGAAATAATGAA
CGGAAGTTTTCTATGTACATTTTCCTCCCAGATGCTCATGATGGCCTGTTTGAGTTAACC
AAGAAGATTTTCTCTGAACCGGCATTCTTAGAACAACATTTACCGACAGAGAAGCACCAT
GTGGGTATTGGNNGTGCCCAAATTCACG

Homology of Contig U35_10326 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g11500.1	440	7e-112	protein\|serpin domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g22020.1	395	6e-134
Arabidopsis v10	None