barSeed - Barley Seed Development Database

Probe CUST_13955_PI390587928

Source Contig U35_22303

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13955_PI390587928	Hv_44K_v2	TTGGCGAGCGGAAGGTAAAGCGACTCCATGATACTTTCCATGAGCCATTTAAACGAGTTA	889	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372192	1419	2e-24	891 - 950	100	60 / 60	plus	ABC38375
MLOC	MLOC_30712.2	529	2e-24	401 - 460	100	60 / 60	minus	ABC38375
MLOC	MLOC_30712.1	3577	2e-24	3003 - 3062	100	60 / 60	minus	ABC08164 ABC38375
JLOC1	JLOC1_20282.1	1130	8e-25	516 - 575	100	60 / 60	plus
Harvest21	ABC18229	1011	3e-25	886 - 945	100	60 / 60	plus
Harvest35	U35_22303	1015	3e-25	890 - 949	100	60 / 60	plus

Contig Sequence (1015 bp)

>U35_22303 1015 Hv_44K_v2
AGTCGGGCCTGCGGGTCGTCCCCTCCCTTGACGTCCCCGCGCGCCATGGACGGAGAGCAA
GGTCGGCAGCGGCCGGACTCCGGCAAGAACCTCATAAAGATCCCGTCCTACCAAGAGGTC
TTCGGTAACGGAGCCGCTGCCTCCTCCTCCTCCTCCACGCCCTCCTCCTACAACCCTCCT
CTCCCCAGCGCCGCCGCTGCCGCCGCCGGCTCTTCGTCGTCGTCGTCGTTCTCCGAGGCC
TTCTCCTTCCTCAAATCCTCCGAGTTCTACTCCCCTCCCCCGCCGCCTCCACAGCCATCC
ACCTCCCCGAGGCCGCCTCTGGCTGGCGCCACCACTACGCCGTCCCAGAGCAAGAACTCC
ATTTTGGTGAGCAATAGGCAGAAAGGGAACCCATTACTGAAGCACATCAGGAATGCGAGG
TGGACGTTCGCTGACATCGTTCCGGACTACGTGATTGGGCAATCATCATGTGCACTCTAC
ATAAGTCTCAGGTACCATCTTCTTCACCCAGACTACTTGTACTATCGGATAAGGGAGCTC
CAAAAGAATTTCAAACTCCGTGTCATCTTGTGCCATATTGATATTGAAGATGTAGTAAAG
CCTTTACATGAAATCACAAGAACATCACTGCTGCATGACTGCACCCTTCTGTGTGGTTGG
AGTCTGGAGGAATGTGGCAGGTACTTGGAGACTATTAAAGTGTTCGAAAACAAGCCAGCT
GACAGCATTCGCGAGCACACTGATAATGATTATTTATCTCGGTTCACTCATGCGCTTACA
TCCATCCGGCGTGTTAACAAAACAGATGTTATCACACTTGGTTCGTCTTTTGGGTCACTT
TCTCGAATCATGGATGCTTCTATGGAAGAACTAGCTCGTTGTCCAGGAATTGGCGAGCGG
AAGGTAAAGCGACTCCATGATACTTTCCATGAGCCATTTAAACGAGTTACACCCCGCCCA
AACCTCGTAGTACCTGATACTCCCGACAGAGAGAAAGCATCTGGTCAGTCTTCAT

Homology of Contig U35_22303 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37490.1	388	7e-148	protein\|DNA excision repair protein ERCC-1, putative, expressed
Brachypodium v1_2	Bradi3g31120.1	392	1e-151
Arabidopsis v10	AT3G05210.1	410	2e-117	\| Symbols: ERCC1, UVR7 \| nucleotide repair protein, putative \| chr3:1479591-1481823 FORWARD LENGTH=410