barSeed - Barley Seed Development Database

Probe CUST_13954_PI390587928

Source Contig U35_22304

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13954_PI390587928	Hv_44K_v2	GTGGACACATCTAGCTAGCGAGAAGGACGTTTGCCAAAATTTTAGTTTATATTGTTATAT	635	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.260	1.670	1.071	0.858	0.242	0.250
Raw	175.692	373.956	204.860	268.162	25.446	28.692

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76668.3	1222	2e-24	851 - 910	100	60 / 60	plus	ABC16476
MLOC	MLOC_76668.2	883	2e-24	512 - 571	100	60 / 60	plus	ABC16476
JLOC1	JLOC1_51128.1	885	8e-25	631 - 690	100	60 / 60	plus
Harvest21	ABC16476	826	3e-25	636 - 695	100	60 / 60	plus	ABC16476
Harvest35	U35_22304	826	3e-25	636 - 695	100	60 / 60	plus

Contig Sequence (826 bp)

>U35_22304 826 Hv_44K_v2
GCGGCGGCGATTGGACCGAGAGGCGGGGCGGCTTGCGGGGAACGAGCCTGGAGCGACGCG
GGGTGGGACTTATAGGGACTTTTTTAAGTCCCTAAACCAATAAGTCCCTGGAAACAAACA
CCCTCTACATGACCTGCAAGATCGTCGAGGGTTTGCTGACGAACGAGGTATCCGCGGCGG
TGAAGGGGCTCCTGTGCCGGAGTGGGCCAACGGCAAGCTCGCGGCGGAGTGCTCGTGGCC
AGACACCATGCAGTGCCAGATGCCCTCGTCCAGCTCCCTGCACTTCACCAACACCCACGA
CGGCTGCAAGTTCAGCTACACCACTGAAGTGACGACGAATGAGTCAAGGGTGGCAGTGCC
CGGGATCCACTTCCACTTCATTTCGGCCGGTGGGAGCGGTGGCTAGGGTTTGTCAGCCGT
GTGGGGGCGTGGGGGAGGGGGACAGAGCGAGAAGAATACAGGGGAAGTGGACTCGATGGC
CCGTGGAGGTAGAGCTCCGTGTGGCATTGAAGAAAGAGGCAAACATGTTCGAAAAATATC
AAGGCGGTGCAAGGGACATAAAGAGGAGCACCACAAGGAAAATGAAGATTGATGGGAGGG
ACACTCTAGGGTGACATGATGATAGGTTGAGAGGCGTGGACACATCTAGCTAGCGAGAAG
GACGTTTGCCAAAATTTTAGTTTATATTGTTATATTTAGGCATTAAATAATAGTTTAGAC
TAATTTTTATTAAAACATGAAATGTTATTGTGGCAACTATTGTGATCAAAAAATTGATTT
AGGTATCACATATTGAAGAAATTCCTANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_22304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None