barSeed - Barley Seed Development Database

Probe CUST_13953_PI390587928

Source Contig U35_22306

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13953_PI390587928	Hv_44K_v2	ACAGTAAAAAATTGCTCACCCATGGTGCAGTTGCTGGAATAGCAGCGAAGCTTGCAACAT	590	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34557.1	3950	2e-24	3157 - 3216	100	60 / 60	minus	ABC09357 ABC14714
JLOC1	JLOC1_22296.1	3892	8e-25	634 - 693	100	60 / 60	plus
Harvest35	U35_22306	693	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_22306 693 Hv_44K_v2
AGCAGTGACTTCGGGCGCTCTGCTCGTTTGACCCGACGACTCCGCGAGCGAGCGAGCGCG
CGAGCCATCTCATTGGCCAGGCTCAGGTCGCCACACCCGCAGCGCCCGCACACACACTCC
CCATCCTCCCCGCAAACCAACCCAACCAGCGCGTCAATCCCGGCCGGCTCGTGCGCGCCG
GGGCGGGGATATTTATTTATTTTAGCCCGGCGAGGGAGCGAGGAGTCCGCCGGCGGGCGA
GGGAGGGAGGGAGGTGGGGATGGAGAGCTACCTGGAGGAGAACTTCGGGGGCGTCAAGGG
CAAGAACTCGTCCGAGGAGGCGCTGCGGCGCTGGCGCAAGCTCTGCAGCGTCGTCAAGAA
CCCCAAGCGCCGCTTCCGCTTCACCGCCAACCTCGACAAGCGCGGCGAGGCGCAGGCCAT
CAAGCACGCCAACCACGAGAAGCTGCGGGTTGCCGTGCTGGTGTCGAAAGCTGCACTGCA
GTTTATACATGGTCTCAAACTTCGAAATGAATATGTTGTCCCTGAAGAAGTCAAGGCGGC
AGGGTTCCAGATTTGCGCTGATGAGCTGGGGTCCATTGTTGAGGGCCATGACAGTAAAAA
ATTGCTCACCCATGGTGCAGTTGCTGGAATAGCAGCGAAGCTTGCAACATCCCCGACGGA
TGGGCTGGATACAGCTGAGGACAGCATGCAGCA

Homology of Contig U35_22306 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g39660.1	1021	2e-79	protein\|calcium-transporting ATPase, plasma membrane-type, putative, expressed
Brachypodium v1_2	Bradi4g03130.1	1020	8e-77
Arabidopsis v10	AT1G27770.1	1020	4e-59	\| Symbols: ACA1, PEA1 \| autoinhibited Ca2+-ATPase 1 \| chr1:9671912-9676010 REVERSE LENGTH=1020