barSeed - Barley Seed Development Database

Probe CUST_13951_PI390587928

Source Contig U35_22308

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13951_PI390587928	Hv_44K_v2	GGACAAAGCACATTTCTAAAAGCTTTTCCTGGGAATGTGAATGACACTGCAGAGCCAGCT	683	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360084	3633	2e-24	1738 - 1797	100	60 / 60	plus	ABC06680 ABC07757
MLOC	MLOC_54800.1	258	7e-23	20 - 79	98	59 / 60	minus	None
JLOC1	JLOC1_35296.1	258	4e-23	20 - 79	98	59 / 60	minus
Harvest21	ABC16546	813	3e-25	684 - 743	100	60 / 60	plus
Harvest35	U35_22308	813	3e-25	684 - 743	100	60 / 60	plus

Contig Sequence (813 bp)

>U35_22308 813 Hv_44K_v2
TGGAAGTTGATGCATTTCTTGATTTCTCAAATGAGCAACATCCACTGATTAGATATATAT
CATGTTTCCCAAGTGGACGCTGTGCTGGCAATGCAGATGACAATATCTCTCTTGAGACAA
TTGAGGCTGATGTATACAAGTCTATCGTAAATGATCTGGATGGCATTCAAGATGCTGAGC
AGAGTTTGTCTACTTCAAATGTCACAGCTGGCTCCAAGACAAGCACAAGCCCTAAAAGTT
CTGTTCTGGGAACGTATGTTACTTGTCTTTCAACGAAATACCGTCTTTCTTCTTTCTGTG
ATGTAGCCTCCAAATCTTCTGCCCCTGTAACAATAAGAAACAGATTTGGTCCTGTTGATT
GTGATGGCATCCACATCTCTTCTTGTGGACATGCTGTACATCAAGAATGTCATGATCGAT
ATTTGTTTTCCTTGAAACAAAGATATATCAGGAGACTCGGTTTTGAAGGAGGACATATTG
TTGATCCTGATCTGGGAGAGTTGCTGTGTCCAGTGTGTCGCAGATTTGCAAATTCCATTC
TTCCAGCATCGCCCGATTTCTCTGGTATAACTAGGAAGGCGATGCCAATTGCTCAAACCA
CGCCTACTGAGGCTGCTGCAAGTATACATAACTTACAGTCCCCTCGTGCACTGGCCCTCC
TTGAAAGTGCCAGAAAAATTGTTGGACAAAGCACATTTCTAAAAGCTTTTCCTGGGAATG
TGAATGACACTGCAGAGCCAGCTNTAGATCCTTCCCTTCGAAGACTCACTATGCTNTACT
ATCCTCGCAGCANAAGCAGCTNTTCAGCATCTG

Homology of Contig U35_22308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05500.2	2057	5e-105	protein\|zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi2g03180.1	2081	8e-133
Arabidopsis v10	None