barSeed - Barley Seed Development Database

Probe CUST_13950_PI390587928

Source Contig U35_22309

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13950_PI390587928	Hv_44K_v2	CGATGGCAATTTGTGAGGCTTTTCGCTCAAAGCTTTTGTGCTTCTTGGGATCTCATCATA	816	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56718.1	3888	2e-24	1411 - 1470	100	60 / 60	minus	ABC14552
JLOC1	JLOC1_36712.2	2941	8e-25	1456 - 1515	100	60 / 60	plus
JLOC1	JLOC1_36712.1	2928	8e-25	1443 - 1502	100	60 / 60	plus
Harvest21	ABC16287	875	1e-24	817 - 875	100	59 / 59	plus
Harvest35	U35_22309	876	3e-25	817 - 876	100	60 / 60	plus

Contig Sequence (876 bp)

>U35_22309 876 Hv_44K_v2
GCCGCACCGTGGCATTTGGTCTCTTTCGGCCGCCTCCCCCTTCTCTTCTCCAATTTCCCA
CCCCCAAACGACGAACTCCCGCCGCCGCCGGCCGCTCCCACGGCGAGCTAGCCCGCCCGA
ATTGCCGTACCTCGCCAGATCCGAGACCGCACGGGCTTCCGGACCTCGGTTCGCCGTGCT
TGGAGCTGAGAATGGTTGAGGGGAAAAGTGTTCAAGTTGACCTTGAGAAAGGACTTAATC
AAATGCCTAATGATAGTAATCCAACTAGCCCTGCAACCATTCAGAAGATGAAACCTGATA
TGGAAGATTCTGGGAGCAAAATTGAATCACCAACTCTGGAGAAGCTTGAGTCTGGAAGGG
AGGAGATTGTTGTCAGCTCATTGGCAACTAATTTACTTTCGGAGAGGTACAAGGACAGAT
TAGCTGAGAAGCTGTTGGGAAATGAGGATGAAACAGACGATGAAGATGATAATGACATTG
CTTTGCCTGATGGCAGCCAATCTCCAGCTTCAAATGAACTTCTTGAGAAGCACAAGAATT
TGCTTAATCTTTTCAACCGGATGGAGAGTTCTATAAGGTTGCTGTGCCTGAGGAAGAAGA
TGCCTACATTTACGAACATTGCAACCCAGGTGGAAGTACTAACGAAGAGAAAGTTCTTGT
ACTCTCATTTGGCCCAGATGAAGCATTTATTCCCAGAAGCAATCCAGATAAATAGGATAC
TCTTGCATGATCAGAAAAGCCTATGCATGTATGCTGACATGGAAATTACACTTCTAAACG
ACGTTGTGGAATGTAATAATCCTCAAGAGTCTCCAGCGATGGCAATTTGTGAGGCTTTTC
GCTCAAAGCTTTTGTGCTTCTTGGGATCTCATCATA

Homology of Contig U35_22309 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g29590.1	557	5e-90
Arabidopsis v10	None