barSeed - Barley Seed Development Database

Probe CUST_13949_PI390587928

Source Contig U35_10330

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13949_PI390587928	Hv_44K_v2	GTCGGATGAGAATGTGTCTCCGAGATATTTGTAACCGCATTCTATACAACAAAAGGTTCA	284	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.126	1.037	1.283	1.001	0.534	0.488
Raw	127.209	171.603	198.756	232.953	45.724	45.744

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16969.3	2652	2e-24	2487 - 2546	100	60 / 60	plus	None
MLOC	MLOC_16969.1	4240	2e-24	3001 - 3060	100	60 / 60	plus	ABC16263
MLOC	MLOC_16969.2	3355	2e-24	2781 - 2840	100	60 / 60	plus	ABC16263
JLOC1	JLOC1_11716.1	4111	8e-25	2864 - 2923	100	60 / 60	plus
Harvest21	ABC24044	673	3e-25	285 - 344	100	60 / 60	plus
Harvest35	U35_10330	673	3e-25	285 - 344	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_10330 673 Hv_44K_v2
ATTGTTGCTAGGAACATCATCAGTGGCCTTTGATGACCTTGAAGAAGAGTGTGCTTCCAT
ATTTTCTTCTCGTAATGTATATCAAGTGGATCGACCGAGTGATGATGATAGATCAAGATA
CTTCAGTATACTGTTCGAGTCACTGCTCTCACTTCAAATGGAAGATTCAAGAAGTAAGTC
GAAAGAGCAAAAGTCTGTCGATCTTCCAAAAGCACCAAAGAAAGTAGATGGACCTAAGGT
TTCTGAGCTGAAAGCTAAGGCAGAAGCTGAGCAACACGCTGTTCGTCGGATGAGAATGTG
TCTCCGAGATATTTGTAACCGCATTCTATACAACAAAAGGTTCAGTGCATTTCACTTCCC
GGTATCAGAAGAGGAAGTACCTGACTATCGAACAATAGTTCACAACCCCATGGATATGGC
TGCTGTCTTGCAGCGGGTGGACTCTGGGCAGTACTTCTCTCAGGCAGCATTTTTGAAGGA
TATTAATCTTATAGTCACTAATGCAAAGACTTACAATGGTGATGATTACAATGGATCTAG
GATCGTGAGTAGAGCATGTGAACTTCGAGACGTGGTGCAAGGTATGTTGTCACAGATGGA
CCCATCATTGGTATCCTTTTGTGATAAAATTGCTGCACAAGGGGGACCACTGCAGGCTAT
GGATGATGAGGAT

Homology of Contig U35_10330 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33980.1	1199	9e-127	protein\|bromodomain protein 103, putative, expressed
Brachypodium v1_2	Bradi4g35150.1	1196	5e-136
Arabidopsis v10	AT1G05910.1	1210	1e-82	cell division cycle protein 48-related / CDC48-related \| chr1:1790796-1796503 FORWARD LENGTH=1210