barSeed - Barley Seed Development Database

Probe CUST_13946_PI390587928

Source Contig U35_10333

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13946_PI390587928	Hv_44K_v2	CTTGTGCTTTCTGAACTTCAAATAAAAGGAGACATTCGTTGTATGTTTTGCTCCTCAAAA	816	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373297	2609	7e-23	2476 - 2532	100	57 / 57	plus	ABC18757
MLOC	MLOC_63374.1	3066	7e-23	46 - 102	100	57 / 57	minus	ABC18757
MLOC	AK376984	2959	3e-22	2904 - 2959	100	56 / 56	plus	ABC18757
JLOC1	JLOC1_41501.1	2990	4e-23	2889 - 2945	100	57 / 57	plus
Harvest21	ABC18757	889	3e-25	817 - 876	100	60 / 60	plus	ABC18757
Harvest35	U35_10333	889	3e-25	817 - 876	100	60 / 60	plus

Contig Sequence (889 bp)

>U35_10333 889 Hv_44K_v2
GCGAGCAATGGATGCCTCTGGATGCAAGGAAAGACGTCGCAGCCAGGATAAACCTTGTGC
TGAAGAAGAAGGGCGTCCAGCACTCTGCGATGAAGAAGGCCGGTGGGAGCTCATCCAAAC
AGAAGGCTCAGGCTCAGGCTCAGAAGAAGGGCGAGCAGTCCAGCCAGAAGGCGGCGGCCG
CAGCAGCCGCAGCCGCAGCCGCAGCGCCAAGCCTAGCAGCACTGTCACTGCTTCAGGTGC
AACCTCTGGTGGAAGGAGACGATGGATATGCAAACTCTGTCCCTCCACGGAAGAGGTTCC
TGGCCCAGGGCTACTCCTTCGAGGAAAAGAGACTGGAGGCGCAGGCCAAAAAGAGCAAGG
GTCCTGCTGATGAAGCCGCAGAGGAGGGAGATGGCAATGGCATGTCCCGTGGCGGCAGCT
CGTCTGATGCCAAGCGGTGCCGGGTTGATCTTACAAGCTCTGACGGCCTGAATGGCGCTG
AACGCAAGAGCAAGGCCAGGAAATCTTCTGGAGCAAAGAAAATGGTGTCTTCTTCACAGG
GCAGCACCCAGGGAGGCGCCGCCGGTGGCTCTGGCTCCAGCGGAGGCGCTGCGTCGGTGA
ATCCGGTGCCTATGGAAGAGATACGCGTGACCAATGGAGAGGCTCCTGTCCAATCGCCGG
TGACGATCGACCTCGCCATGTATGACTGAAGCCGGGAGCAGGATGTGATCAAGGCTGGCC
TCAACTTTCCATTCATGAACCGTCGTTTTTCGAACATTTCCGTGCATTCTCATATCGATG
CGTGTGCTTTTTATTCCCATTCTAGACAGAGAGTTTCTTGTGCTTTCTGAACTTCAAATA
AAAGGAGACATTCGTTGTATGTTTTGCTCCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None