barSeed - Barley Seed Development Database

Probe CUST_13945_PI390587928

Source Contig U35_10334

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13945_PI390587928	Hv_44K_v2	GAGTTGGAGGTGACGCAGGTAGCAGAGGAGTTGATAATGGTGAACATGAGACATGGCAAT	566	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365195	1159	2e-24	531 - 590	100	60 / 60	plus	ABC08578 ABC16727 ABC40184
MLOC	MLOC_13710.1	937	6e-24	558 - 616	100	59 / 59	minus	ABC16727
JLOC1	JLOC1_9305.1	1042	3e-24	360 - 418	100	59 / 59	plus
Harvest21	ABC21213	631	3e-25	567 - 626	100	60 / 60	plus
Harvest21	ABC16727	904	1e-24	330 - 388	100	59 / 59	plus	ABC16727
Harvest35	U35_10334	632	3e-25	567 - 626	100	60 / 60	plus
Harvest35	U35_23025	981	1e-24	330 - 388	100	59 / 59	plus

Contig Sequence (632 bp)

>U35_10334 632 Hv_44K_v2
GGAGAGTAGATCAGATCTAGCTGTGTAGCAGAGCAATGGAGCCCGACATGGACGTGAGCT
TCGATTTCTCTTGGGAGGCCCTGGTGCTCGAGCTCGGCGACGCAAATAACATGTACCTGC
CGGCCGAGGACTCTCTCTCCGGCCTGTACGACGACTCGACGAGCTCGCCGGACGGCGCCA
CCTCGCGGCCGACGACCAAGGCAACAACCAGCTTGGAGAGAAAGAACATCATCAACGAGA
GGCGGCGGCGCCGGACGCTCAACGAGAAGCTCTACGCCATCCGCCGTGTCGTTCCAAACA
TCACCAAGATGGACAAGGCGTCCATCATCCAGGACGCCATCGCCTACATCGAGGAGCTGC
AGGAGCAGGAGCGCCAAATCCTTGCCGCCCTCAGAACCGACGGCTCCACCGCCGTGGTCA
AGGCCGAGGACGCCGCCTCGACCGGCAGCAACGGAGTGGACCATGGCGCGGGCTCCTCGC
CGGGGAAGAAGATGAGGAGGACTACCTCTGCCTCCTCCATTAACGGCGCCTTGTGTTCCG
GTGCCACCCAACCGGTTCAAATCCTCGAGTTGGAGGTGACGCAGGTAGCAGAGGAGTTGA
TAATGGTGAACATGAGACATGGCAATGCCCAC

Homology of Contig U35_10334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None