barSeed - Barley Seed Development Database

Probe CUST_13944_PI390587928

Source Contig U35_10336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13944_PI390587928	Hv_44K_v2	GTCATTGTACCATTGTAACCTTGAGTGTGTTCCTTTTGTAACGGAATTGATTCATTTTTC	929	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.190	1.349	1.367	1.065	0.450	0.356
Raw	1165.236	2019.866	1812.437	2194.833	336.908	282.963

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23712.2	2432	2e-24	32 - 91	100	60 / 60	minus	None
MLOC	MLOC_23712.1	2053	2e-24	69 - 128	100	60 / 60	minus	None
JLOC1	JLOC1_16362.1	1944	8e-25	1826 - 1885	100	60 / 60	plus
Harvest21	ABC51165	408	3e-25	327 - 386	100	60 / 60	plus
Harvest35	U35_10336	1026	3e-25	930 - 989	100	60 / 60	plus

Contig Sequence (1026 bp)

>U35_10336 1026 Hv_44K_v2
TGCTGCTGCTCTCTTCAGTCTTGCAATTAACCATAAGCAGATGAGCATGTACTTTGCGCC
AGCTTTTTTTGGGCATCTTCTTGGAAAATGCCTGAAGCAGAAGTATCCAATTATTGAGAT
CATGAAACTTGGTTTTGTTGTACTGGGAACTTTTGCTCTTGTTTGGTGGCCTTATGTGCA
TTCTTATGAGGCGGCCATGCAGGTAATCTCTCGATTGGCTCCATTTGAGAGAGGTATATA
TGAGGATTATGTTGCAAATTTCTGGTGTACCACCTCAGTTCTTATCAAGTGGAAGAGATT
GTTCGCAATAAAGCCTCTGAAACTTATGAGTCTGTCTGCTACCATCCTGGCTTTCTTGCC
TTCATTTCTTCAGCAAGTCAAGTCACCAAGTAATCTTGGCTTCCTCTATTCTCTGTTGAA
CAGCTCGTTCTCTTTCTATCTATTCTCGTACCAAGTGCACGAGAAATCAATTTTGCTTCC
TCTTTTACCCGCAAGCCTTTTAGCATTACACGAACCTCAGCTGCATGGATGGTTCACTTA
CTATGCACTTTTTTCGATGTACCCGCTTATCTGCCGTGATCAGCTTCTTCTACAATATAT
AGCTGTTCTTGGATTGTTCGTTCTTATTTACTACCCACCTGGTGGAAACTACGGAAAGGG
GGTGAAATTTCCTTCTGGAATAATGGTAGTTCTGAGCCTGCCATTTTTATGCTCGATCTT
ACTTCACACTGTGTACCTGCAAATAGAGCCTCCAAAGAGGTATCCCTTCCTCTTTGATGC
ACTGATAATGTTCATCTGCTTCTCACAGTTTATTATTTTGACCCTGTACACAAATTATAA
GCAATGGATGTTGGACTTCCACCCTAGACCTGTAGGTAGGAAGAAGGACCTATGATTGTA
AATTTTGACAGCTAATTTTGTAGAAGATAGTCATTGTACCATTGTAACCTTGAGTGTGTT
CCTTTTGTAACGGAATTGATTCATTTTTCTATGAAATGGATGAAATGTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_10336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07010.1	518	1e-155	protein\|glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g63540.1	519	3e-163
Arabidopsis v10	AT5G38460.1	533	1e-99	ALG6, ALG8 glycosyltransferase family \| chr5:15398592-15400987 REVERSE LENGTH=533