barSeed - Barley Seed Development Database

Probe CUST_13932_PI390587928

Source Contig U35_10340

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13932_PI390587928	Hv_44K_v2	TCAAGTGTCTAGTAGTACGCAGCAGTATTCTCACGTTAATTGTTTGAACCTTTACTCAAA	488	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.939	2.342	1.272	0.712	0.226	0.224
Raw	425.347	805.044	367.992	334.896	36.468	40.349

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC39310	563	1e-23	15 - 74	98	59 / 60	minus	ABC39310
Harvest35	U35_10340	562	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_10340 562 Hv_44K_v2
GTTAATGCTGAACTCCAAGCTCGCTGTGCTAAAATCAAACATGTCCGGCTGCCAGGAGGA
TGGCCTCATGTTCATTGCCCAGAACTTGATATCATTGAAGAGGACGAAGGTGAAGTGACC
GAGCTACCTGATCTCTATGAATTGGAGGCTCAGGCTCTCCGCAACGGGGCAGCGATGGAC
AATGTAGCGATGGACAATGATGACTACGGTGAGAACTACTGGGAGGACTACTCGCTCCCG
TCGTCCCCTGACTCGCCTGTGCCGACCTACTCCATGGACGATCCCAGATACTACTGGGAG
CTGTAACAGATGCAGCTGTGCCATGTTCAGTAGTTCAAGTCACTGTCTTGGTGTTTTGGA
TCCTGAATATTTTGTGTATATCCCTGCAGTAAGGCTTTTGATGTAGAAACAAGCCGATGG
TGCTTTTGAATCATCTGCCTCGTAGTGTGTGTTTTACTAGTTTGTGTAAATGGTTGGACG
GACTGCTTTCAAGTGTCTAGTAGTACGCAGCAGTATTCTCACGTTAATTGTTTGAACCTT
TACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None