barSeed - Barley Seed Development Database

Probe CUST_13926_PI390587928

Source Contig U35_10346

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13926_PI390587928	Hv_44K_v2	CCCAAGTGATCCCTTGCGTGGATTCATAACCAACTTCATGTTTTGAATCAAGAATTTTTT	533	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.130	1.844	1.136	0.754	0.330	0.430
Raw	306.370	406.408	223.098	235.856	36.150	50.942

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9793.2	4344	2e-24	4270 - 4329	100	60 / 60	plus	ABC25200
JLOC1	JLOC1_6353.4	4295	8e-25	4222 - 4281	100	60 / 60	plus
JLOC1	JLOC1_6353.3	4325	8e-25	4252 - 4311	100	60 / 60	plus
JLOC1	JLOC1_6353.2	4343	8e-25	4270 - 4329	100	60 / 60	plus
JLOC1	JLOC1_6353.1	4339	8e-25	4266 - 4325	100	60 / 60	plus
Harvest21	ABC25200	638	3e-25	46 - 105	100	60 / 60	minus	ABC25200
Harvest35	U35_10346	638	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_10346 638 Hv_44K_v2
GGAAAATGGGTCCATCCGGCAAATTCACGGAGCATTCCCATGTCATCATCAGCGTGCCCG
AGCCGGAAACTATGGACGTTTTCCATGACTTTGGGTGTAGGAAATACCACATCGCCGTCG
CAGGAAGAGGGATGCAGATGGTTGAGTTCTTGCCGCCTAAAGACGACTCGATGAAGATAG
CGTGAGAACAGCCTGGTGGCGCGTCGTGGAATTAGTTCCTGCAAGCGGGAGGGTGCGCAG
TCAGTTTTTTGGGGATGATTTGTAACTCCATTTGATGTGTAGCTCTTTCCGAGAGAGGGG
ATGAATTACGGAATAGTCATGATCTGGAAATCTGGTGCCATGCATGGAAGGCTGGCTTGA
TTTGCTTGAATGGAACAGAGGAATCATCTGGATGGAATGTTCTGTGGCAAAGCCATCTGA
TCCCTTTCAATGCCAACAGGAAATATTCACCGATAACACTGAAAAACCATATTCTAATGC
TAGCAGTAAGTTGGATTGAACCTCTCGTTTCTTTTCATTTTGCTCGATCGTTCCCCAAGT
GATCCCTTGCGTGGATTCATAACCAACTTCATGTTTTGAATCAAGAATTTTTTGTAAGTA
TCTAGAAGCATTTGAGCATTGCATTGAAAAAAAAAAAA

Homology of Contig U35_10346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None