barSeed - Barley Seed Development Database

Probe CUST_13925_PI390587928

Source Contig U35_10347

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13925_PI390587928	Hv_44K_v2	ATTAAATCCTTCGTCGCCTCCCTCGCTCTCTTCGCCCTCATCATGGCGCTCTGGCAGTTC	45	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376599	2096	2e-24	339 - 398	100	60 / 60	plus	ABC24717
MLOC	MLOC_57908.1	2362	2e-24	409 - 468	100	60 / 60	plus	None
JLOC1	JLOC1_37604.1	1766	8e-25	409 - 468	100	60 / 60	plus
Harvest21	ABC21137	543	3e-25	46 - 105	100	60 / 60	plus
Harvest35	U35_10347	543	3e-25	46 - 105	100	60 / 60	plus

Contig Sequence (543 bp)

>U35_10347 543 Hv_44K_v2
GGCGGCGGCATTGGCGGTGGCGCGTTCGGCGTATCGTGCCTCGACATTAAATCCTTCGTC
GCCTCCCTCGCTCTCTTCGCCCTCATCATGGCGCTCTGGCAGTTCCACCCGTACCAGCCC
ATCCTCGCCATCACCCGCTCCTCCTGTCCCCTCATCCCTCCCCCATCTACCGCCGCCGCC
TCCACCACCATCACCACCGCTGCAGTATCCTTCTCCAACTCCACAGCCGACAGAGCCGCA
CCGACCACCGCCGCCAGCGCGGTAAAGGCGCCAACCTTGCCATCCCGGCCGCGGGACCCC
AATAAGCGGGAGCTCCGGCCGTACGGCAGCGCGGCGGCGCTGTTCGTGCAGATGGGCGCG
TACCGGGGCGGGCCGCGCACATTCGCCATCGTGGGGCTGGCGTCCAAGCCGGCGCACGTC
TTCAGCACCCCTTACTTCAAGTGCGAGTGGCTCCCCAACCCGGACCCGGCCGGCGGCCCG
CCGCCGAGGCCCGTCCGGACCAAGGCGTACAAGATGCTGCCCGACTGGGGCTACGGCCGC
GTC

Homology of Contig U35_10347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22330.1	522	1e-54	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None