barSeed - Barley Seed Development Database

Probe CUST_13921_PI390587928

Source Contig U35_22321

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13921_PI390587928	Hv_44K_v2	CGTGTTGTATCTACTTGCGTGCTATCTACTAGTGGTCATAATTTAAGATAAACAAGAATG	624	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.903	5.836	1.207	0.750	0.435	0.566
Raw	91.615	144.044	26.094	27.453	3.499	7.224

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37760.1	1012	2e-24	50 - 109	100	60 / 60	minus	ABC16487
JLOC1	JLOC1_24486.1	970	8e-25	13 - 72	100	60 / 60	minus
Harvest21	ABC16487	713	3e-25	625 - 684	100	60 / 60	plus	ABC16487
Harvest35	U35_22321	713	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (713 bp)

>U35_22321 713 Hv_44K_v2
GTCGAGGTCAAGGTCAGCACGCAGCCCCAGGCGCACAGCAGTGGAGCGCGGGTGCACCGC
TCCTCGCTCGTCATCAACAAGTTCGTCGGCGCCGAGCCCGTCAACGCCTCCGAGATCAAT
GACGCCGCTGCTGTGCCGCCGCAGCAGCCACGCAAGCCTGCGAGCAGTTCGGCAGCCGCT
GCCTTGGCCGCAGCTCCGGCCCTAAGCGCGACTGCGACACTGCCGGAAGATGACGACGGC
ACTGCTGCCACGCCCTGCGAGGGCAAGGTGCTGATGACGACGAGGAGGCGGCGGAGCAAG
CAGGAGCTCCTCAACCACATGCGCCGGTGCGGCCAGCTGAGCGGGCAGCTCTTCATTTGG
GAGCCGCGCGTCGCCACCTCCTCCTGAGCCCATCGTCGTCCCGCACGACGCGCCGCCGCC
GCCTCCTGATTCCGTCCGACTCCATGCCTCGAGGAGGGCCCTGTTTGTTTGTAGCCGTTG
CTGCTGCCTGGTGTAACGTAAGCGTGCGTAATATTGATGTCTGTGTTAGTAGTAAGTGAT
TTGATAATCACGTGATTGGCTTAGCCGTACGAGCGAGCGAGAGCGAGAGTAGATTGCTTT
GGTTTATCCCCGTGCCTCCGCGCACGTGTTGTATCTACTTGCGTGCTATCTACTAGTGGT
CATAATTTAAGATAAACAAGAATGTTTGTGTGATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22321 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None