- Probe CUST_13920_PI390587928
- Source Contig U35_22322
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13920_PI390587928 | Hv_44K_v2 | TATGTCATCCACGAGATTTATTCTCCTTGCAAATGTGGCAAGCCAATTGCATTCAAAAAA | 395 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.447 | 1.491 | 1.121 | 0.815 | 0.316 | 0.287 |
| Raw | 694.888 | 1123.558 | 729.602 | 824.927 | 115.679 | 112.282 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_52665.1 | 907 | 6e-21 | 85 - 141 | 98 | 56 / 57 | minus | |
| Harvest35 | U35_22322 | 466 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus |
Contig Sequence (466 bp)
>U35_22322 466 Hv_44K_v2 AGACGGTGGTGCTCGGGGGCGTCAAGATCGCTGAGACGCTGGCGGCCGTGCCCGACGCGG AGGTGCGGAGGATGCGAGAGCGCGCGCTGGAGATGGCGCCCAGGGTGCTCTACCGGAGAC ACGGGAGCACCGCGGAGCTGAGGGAGGCGGGTAAGGACGCGGTCGACCTCGCCGTGGACG GCGCGCTCCGGAGGATTCGCAGGCGGGCTCGCGCGCTGGAGGAAGGCCAGCCGGAGAGGA TATACGCGCAGGAGGATGACAGTGTCGAGACGTAGGACTACGAAATGAAATGAAATGCTC TTGAGGACATTCTCTTAGTCTGGATTTGGACATTTTTATGTCGTGCAAAATCCGCAGTTT ACTTCCATCTTTCGCTTTGAAGAGTGTACATTTGCTATGTCATCCACGAGATTTATTCTC CTTGCAAATGTGGCAAGCCAATTGCATTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_22322 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |