barSeed - Barley Seed Development Database

Probe CUST_13916_PI390587928

Source Contig U35_22326

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13916_PI390587928	Hv_44K_v2	AAGGCGGGCCCGGGCCGCAAGTTCAAGCACGGCAAGATCATCAAGACGTATTACCTTGAC	424	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_202.1	393	7e-23	279 - 338	98	59 / 60	minus	None
MLOC	AK368783	646	3e-21	426 - 485	97	58 / 60	plus	None
JLOC1	JLOC1_138.1	354	4e-23	252 - 311	98	59 / 60	minus
Harvest21	ABC19937	465	1e-24	407 - 465	100	59 / 59	plus
Harvest35	U35_22326	484	3e-25	425 - 484	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_22326 484 Hv_44K_v2
ACAGAACCGCAGAAGCAAACCAAGGAAACGATCCAAGATGCGTCGCGAGGGGCGGCAGCG
AGGGTGGGTGCGCGTGTACGACCGCGAGCTGGTCGACCCGGATTGCAAGCGCCGCGCCGC
GCACGTCGTGGACGTCGACGGGCAGGCCCCGGTGGTGGCCAACGGCGGCTACGTCAGGGC
GTCGCGGAGGCCGACCAACCACTCCAAGCCCGGCGGCCGCCGCGCCCTCGAGGCGCTCTG
CAGGAAGGCCCTCGAGCAGGAGGAGGAGGAGGACGAGGCGCCTCCGCCGCAGCCGGCCGG
GCGGTACGGGTACTCGCCGGGCTGGTGGCCCTCGTCGCCGCCCTTCGGCCACGGCGCCGT
CGCGCAGAGGCAGGCGCGGGCTCAGCCGGCGCCGGTGCGTTCGGAGGCCGGGAAGGCGTC
GTCCAAGGCGGGCCCGGGCCGCAAGTTCAAGCACGGCAAGATCATCAAGACGTATTACCT
TGAC

Homology of Contig U35_22326 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None