- Probe CUST_1390_PI390587928
- Source Contig U35_30049
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1390_PI390587928 | Hv_44K_v2 | GCCGGCGGCGTCAGCCCGGAGGTGAGGGCGGTGCTGGACCCGTGGATCTTGGCGGGGCGG | 77 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.845 | 1.445 | 1.844 | 1.149 | 0.663 | 0.966 |
| Raw | 20.728 | 53.299 | 59.734 | 64.322 | 11.862 | 18.871 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367368 | 2518 | 3e-21 | 1587 - 1646 | 97 | 58 / 60 | plus | ABC19086 ABC29898 |
| Harvest21 | ABC29722 | 137 | 3e-25 | 78 - 137 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30049 | 137 | 3e-25 | 78 - 137 | 100 | 60 / 60 | plus |
Contig Sequence (137 bp)
>U35_30049 137 Hv_44K_v2 GCGCCAGCCGCATGCGCGAGTGGATGGCGTACCACGCGCACTTCTTCGGGCCCAGGTCGC ACTTCGTCTTCCACGACGCCGGCGGCGTCAGCCCGGAGGTGAGGGCGGTGCTGGACCCGT GGATCTTGGCGGGGCGG
Homology of Contig U35_30049 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |