barSeed - Barley Seed Development Database

Probe CUST_13907_PI390587928

Source Contig U35_10355

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13907_PI390587928	Hv_44K_v2	CGGTTGGGTTACAAAGTGGATGGAGCCAAATCGCTCGCCATAAGGTAATCGAAACTTAAA	581	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.227	1.213	1.252	0.913	0.402	0.467
Raw	944.804	1502.434	1324.573	1522.320	235.385	298.840

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250927.1	1751	2e-24	1623 - 1682	100	60 / 60	plus	ABC19044
MLOC	MLOC_73341.2	2154	2e-24	2093 - 2152	100	60 / 60	plus	ABC19044
Harvest21	ABC19044	641	3e-25	1 - 60	100	60 / 60	minus	ABC19044
Harvest35	U35_10355	641	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_10355 641 Hv_44K_v2
GTAACTTGGATGCTGTTTACGACATCACGATCGCATACAAGCATCGCCTCCCAACGTTCA
TGGACAACGTGTACGGTGTGGACCCTTCCGAGGTCCACGTCCACACCAAGATCATCCAGG
TCTCCGACATACCCACCGCAGAGGACGAAGTATCTGACTGGCTGACCGAGAGGTTCAGGC
TGAAGGATGAGCTCCTGTCTGACTTCTCGACACGAGGCCACTTCCCCAACGAAGGCACCG
AGGAGGAGCTGCCGACGCTCAAGTGCGTCGCGAACTTCGCGGCGGTGATGGGCATGACGG
GCGTGTTCATCTACCTGACCCTGTTCTCGTCCGTGTGGTTCAGGGTCTTCGCCGCGTGCA
GCGCCTCTTTCCTCACGTTTGCTACCCTCTACTCTGTGCACGCGCCGCAGATCGTGTGTT
TGCCGGAGGCTGGGGTGCATGCCAAGAAAGCTTGAGCTTGGCGTTGTAAGCTGGCGCTGG
AAGCTGTTCGCGTGTGTCAGCACGCAGTACAAAGATGTTTAGCATGTACACGCAGTTTGT
GGCGTCATTCTTTTGTGTGTGTGTATGAGCAGTTGCATCTACGGTTGGGTTACAAAGTGG
ATGGAGCCAAATCGCTCGCCATAAGGTAATCGAAACTTAAA

Homology of Contig U35_10355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g42270.1	398	2e-77	protein\|acyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g20650.1	400	9e-83
Arabidopsis v10	None