barSeed - Barley Seed Development Database

Probe CUST_13897_PI390587928

Source Contig U35_22335

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13897_PI390587928	Hv_44K_v2	TCCTTGATATACCTGATGATGGTGGATTTGTGACTCTGCTAACTGATACTGGTAGCACCA	366	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34570.1	838	2e-24	360 - 419	100	60 / 60	minus	ABC02581
JLOC1	JLOC1_22306.1	786	8e-25	300 - 359	100	60 / 60	plus
Harvest21	ABC17870	556	3e-25	367 - 426	100	60 / 60	plus
Harvest35	U35_22335	558	3e-25	367 - 426	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_22335 558 Hv_44K_v2
CGGTTCTCTTGTGCACCGAGCGATTCCTCCGTTGCTCTCCGATCCTGTCTCGCGTTTGTT
GGAATTTGTAGAGACTGTTTTGGGTCCTGATCCGAGGAGAGGAGATGTCGGACGAGGAAG
ATCATTTCGAGTCGAGGCTTGCGTCGAAGACCTTCACGCAGCAGGCCCGCACCATCCGTA
AGCGAGGGTACATCGTCGTCGAGAACCGCCCCTGCAGGGTTGTGGATGTTTCTACATCTG
GGTCTGGAGGTTATGCCAGCTGCCACTTTGTTGCTATTGACATCTTCACTGGCGAGAAAT
TTGAATATAGTGTGTCATCTTCTCGCAACTGTGGTGTTCCTTATGTGATTATCACAGAAT
ACCAGCTCCTTGATATACCTGATGATGGTGGATTTGTGACTCTGCTAACTGATACTGGTA
GCACCAAAGATGACATAAAGCTCCCAACTGATGATTCCCCTCGTGACCAGCTCAAGGATG
GCTTTAACGAAGGCAAGGACCTGATGGTGTCGGTCATGTCCGCCATGGGAGAAGAGCAGA
TTTGTGGGTACAAGGACA

Homology of Contig U35_22335 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g32240.1	161	4e-64	protein\|eukaryotic translation initiation factor 5A, putative, expressed
Brachypodium v1_2	Bradi1g59110.1	162	1e-60
Arabidopsis v10	AT1G13950.1	158	6e-63	\| Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A \| eukaryotic elongation factor 5A-1 \| chr1:4773631-4774668 FORWARD LENGTH=158