barSeed - Barley Seed Development Database

Probe CUST_13895_PI390587928

Source Contig U35_22337

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13895_PI390587928	Hv_44K_v2	AGGAAAATTAGGGAGAGCTTCCAGTTTGAGTATCAAACAATGGTGGGCTTGGCCACAATC	61	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364109	1851	2e-24	63 - 122	100	60 / 60	plus	ABC11969
MLOC	MLOC_18709.1	264	7e-23	116 - 175	98	59 / 60	plus	None
JLOC1	JLOC1_12951.1	204	4e-23	56 - 115	98	59 / 60	plus
Harvest21	ABC19913	608	1e-23	40 - 99	98	59 / 60	plus
Harvest35	U35_22337	631	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_22337 631 Hv_44K_v2
AGCTCTCCTCCAAGAGCGCAATCAACCTCAAACTCGCACAATCGAACGCCCCAACAAAAC
AAGGAAAATTAGGGAGAGCTTCCAGTTTGAGTATCAAACAATGGTGGGCTTGGCCACAAT
CGCCATGGAATGGCTCCAAGAGCCAGTGACCTGGTTCTTCATTGCCTCGGTGGTCCTCGT
GGTGCTGCAGCGGCTGCGACGGCGGCGTGGCAAGGCGCCGCCGCTGCCCCCGGGGCCGTA
TCCGCTGCCGATCGTCGGCAACATGTTTACGATGGACCAGGACCAGCTGACCCACCGGGG
GCTCGCGGCTCTGGCGAAGCAGTACGGCAGCATTTTCCACATCCGCCTCGGCAAGGTCCA
CGCCATCGTCCTGTCGACGCCGGAGTACGCCCAGGAGGTGCTGCAGGCGCAGGACGTCGC
CTTCTCGAACCGGCCGGCTACCATCGCCGCCATATACCTCACCTACGACCGCGCCGACAT
GGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGCGCAAGCTCTGCGTGATGAAGCT
CTTCAGCCGGCGCCGCGCGGGGACCTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGT
CCGCGCCGTGGCCCGGCAGACCGGCGAGTCC

Homology of Contig U35_22337 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36848.1	531	2e-60	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g30590.1	538	2e-62
Arabidopsis v10	None