barSeed - Barley Seed Development Database

Probe CUST_13894_PI390587928

Source Contig U35_22338

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13894_PI390587928	Hv_44K_v2	AGTGAAAGCGTTGTCAAACTGCCTGATGAGGTGTATTACAAAGATGCATTAATGGCACCT	880	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14312.10	5812	2e-24	4217 - 4276	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.4	5709	2e-24	4264 - 4323	100	60 / 60	plus	ABC09063 ABC37110
MLOC	MLOC_14312.13	4646	2e-24	3285 - 3344	100	60 / 60	plus	ABC09063 ABC37110
MLOC	MLOC_14312.8	5823	2e-24	4168 - 4227	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.3	5668	2e-24	4187 - 4246	100	60 / 60	plus	ABC09063 ABC37110
MLOC	MLOC_14312.16	3724	2e-24	1913 - 1972	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.15	3035	2e-24	1937 - 1996	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.5	6469	2e-24	5175 - 5234	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.12	5721	2e-24	4060 - 4119	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.9	6172	2e-24	4729 - 4788	100	60 / 60	plus	ABC09063 ABC37110
MLOC	MLOC_14312.6	5929	2e-24	4264 - 4323	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.11	6597	2e-24	5120 - 5179	100	60 / 60	plus	ABC09063 ABC37110
MLOC	MLOC_14312.14	5100	2e-24	3376 - 3435	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.7	6375	2e-24	4264 - 4323	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.2	6003	2e-24	4177 - 4236	100	60 / 60	plus	ABC09063
MLOC	MLOC_14312.1	6150	2e-24	5101 - 5160	100	60 / 60	plus	ABC09063
JLOC1	JLOC1_9770.11	5526	8e-25	3653 - 3712	100	60 / 60	plus
JLOC1	JLOC1_9770.10	5663	8e-25	3575 - 3634	100	60 / 60	plus
JLOC1	JLOC1_9770.9	5741	8e-25	3653 - 3712	100	60 / 60	plus
JLOC1	JLOC1_9770.8	5435	8e-25	3562 - 3621	100	60 / 60	plus
JLOC1	JLOC1_9770.7	5650	8e-25	3562 - 3621	100	60 / 60	plus
JLOC1	JLOC1_9770.6	6013	8e-25	4140 - 4199	100	60 / 60	plus
JLOC1	JLOC1_9770.5	6026	8e-25	4153 - 4212	100	60 / 60	plus
JLOC1	JLOC1_9770.4	6241	8e-25	4153 - 4212	100	60 / 60	plus
JLOC1	JLOC1_9770.3	6319	8e-25	4231 - 4290	100	60 / 60	plus
JLOC1	JLOC1_9770.2	6228	8e-25	4140 - 4199	100	60 / 60	plus
JLOC1	JLOC1_9770.1	6104	8e-25	4231 - 4290	100	60 / 60	plus
Harvest21	ABC19100	968	3e-25	881 - 940	100	60 / 60	plus
Harvest35	U35_22338	1105	3e-25	881 - 940	100	60 / 60	plus

Contig Sequence (1105 bp)

>U35_22338 1105 Hv_44K_v2
TTGTCCCAAACCACGGATGCTTGTGTGTGCCCCGTCAAATGCTGCAACAGATGAGCTGCT
TTCTCGTGTTCTTGACCGAGGTTTCATAGATGGCGAGATGAAGGTTTACCGCCCTGATGT
TGCTCGTGTTGGAGTTGACACACAGTCTCGTGCTGCCCAAGCTGTATCAGTTGAGCGACG
AACGGAACAGCTTTTGATGAAGGGCCGCGATGAAGTAATAGGGTGGTTGCAGCAGCTAAA
AGGCCGCGAGCAGCAGTTATCACATGAGATAGGGCTTCTACAGAGGGAACTTAATATCGT
TGCAGCAGCTGGTAGATCCCATGGTTCAGTTGGGGTAGATCCTGATGTGCTTGCTCACAG
GGATCGTAACCGTGACATTCTGCTTCAAAAACTTGCTGCCTCTGTGGAAAGCAGGGATAA
AGTACTTGTAGAGATGTCAAGGCTGCTGATATTAGAAAGCAGGTTCCGTGTTGGCAGTAA
CTTCAATCTGGAAGATGCTAGGTCTAGTCTGGAAGCCAGTTTTGCCAACGAAGCAGAAAT
TGTTTTTACAACAGTGTCAAGCAGTGGGCGCAAGTTATTTTCTCGCCTTAGTCATGGTTT
TGATATGGTTGTTATCGATGAGGCAGCTCAGGCCAGTGAAGTAGGAGTCCTCCCTCCACT
TGCACTTGGTGCCGCTAGATGTGTCTTGGTAGGTGATCCGCAGCAGCTCCCTGCCACTGT
TATTAGTAAAGCGGCTGGAACTTTACTCTATAGCAGGAGCCTTTTTGAGAGGTTTCAGCA
GGCTGGTTGCCCTACCATTTTGTTGTCAGTGCAATATCGGATGCATCCCCAGATCCGAGA
GTTTCCATCACGATACTTCTATCAAGGCTGCCTTACAGACAGTGAAAGCGTTGTCAAACT
GCCTGATGAGGTGTATTACAAAGATGCATTAATGGCACCTTACATTTTTTATGACATCTC
ACATGGTCGTGAGTCTCATAGAGGGGGATCATCTTCATACCAGAATGTTCATGAAGCTCA
GTTTGCATTGCGTTTATATGAGCATCTTCAGAAACTTGTGNAAGTTAATGGTGGTAAGAA
GGCATCTGTTGGTATAATCACTCCA

Homology of Contig U35_22338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi3g21287.1	1379	0.0
Arabidopsis v10	AT2G19120.1	1090	8e-179	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:8287036-8291802 REVERSE LENGTH=1090