barSeed - Barley Seed Development Database

Probe CUST_13878_PI390587928

Source Contig U35_1253

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13878_PI390587928	Hv_44K_v2	TACTCTGTTGGCCAGAAAATGTGACTCTTCTGCTGATCAAAATTGGACGAGATCTGATTC	775	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371819	949	2e-24	890 - 949	100	60 / 60	plus	ABC03409 ABC03410 ABC03412
MLOC	MLOC_62602.4	1688	2e-24	1607 - 1666	100	60 / 60	plus	ABC03409 ABC03410
MLOC	MLOC_62602.5	1658	2e-24	1595 - 1654	100	60 / 60	plus	ABC03409 ABC03410
JLOC1	JLOC1_40981.4	3112	8e-25	2910 - 2969	100	60 / 60	plus
JLOC1	JLOC1_40981.3	1809	8e-25	1607 - 1666	100	60 / 60	plus
JLOC1	JLOC1_40981.2	1800	8e-25	1598 - 1657	100	60 / 60	plus
JLOC1	JLOC1_40981.1	989	8e-25	787 - 846	100	60 / 60	plus
Harvest21	ABC03409	999	3e-25	919 - 978	100	60 / 60	plus	ABC03409
Harvest35	U35_1253	856	3e-25	776 - 835	100	60 / 60	plus

Contig Sequence (856 bp)

>U35_1253 856 Hv_44K_v2
GTTTATATAGTTTAGGGTTAGTTACCTCCCTGAAGAAGTGAAGGAAGTCTAGAAATCTGC
TGTACAGACTTGCAAATGGCGCTTGAGACTCGGACCTGCATGTGATGTGGTGTGATTCTA
GACCGCTGATCCAGTGAGAATCACCTGAACAGTGCATAGGTATGACATGTTGACTATGCT
TGTACGCCAGAGGAAGTGCAGCAGCATTTCCAAGCTTGTGGAACCGTCAACAGAGTGACA
ATCTTGACTGACAAGTTTGGGCAGCCAAAAGGCTTTGCTTACGTGGAATTTCTGGAACAA
GAAGCTGTTCAGGAGGCTCTTAATCTGAATGAATCTGAATTGCATGGTCGTCAGATCAAG
GTGTCACCAAAGAGGACTAACGTCCCTGGGATGAAGCAGCGTCCTCCACGAGGATTCAGT
CCCTACCATGCTTACCCTTATAGGTCATACGGGGCACCGTATTTTCCACCATATGGATAT
GGGAGAGTTCCCAGATTCCGCCGGCCAACACGATACAGGCCGTACTTTTGAGAGAAGAAG
GCTCTCATGAAGTCCAATGCATTGCCAGTAGCCATACTGCGGAATAATCTAGCTGCCCCT
GCTTCAGTTACATTGTTTGGCTAGTAGACATAATCTGACGACGGTCGAATGCCCCTATCG
TGTCGTGTCCTCTTAATCATCACTGTACTGTGGGCTTGCAGTATGGATTCGGTCATGTGG
TGATATTGGTTTGCTCTACTCTGTAGCCGTATTGTCTGATCTCGCTATGTGTGCGTACTC
TGTTGGCCAGAAAATGTGACTCTTCTGCTGATCAAAATTGGACGAGATCTGATTCTTTAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_1253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52140.2	213	3e-59	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g58600.1	211	1e-60
Arabidopsis v10	None