barSeed - Barley Seed Development Database

Probe CUST_13877_PI390587928

Source Contig U35_1254

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13877_PI390587928	Hv_44K_v2	GTACTTGCTGTTGGTTCAATACCATCTCGTGTTGTGGTATATATTAGTAGATAGAGAAAA	885	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62602.3	2038	2e-24	96 - 155	100	60 / 60	plus	ABC03409 ABC03410
MLOC	MLOC_62602.1	3435	2e-24	1371 - 1430	100	60 / 60	plus	ABC03409 ABC03410
MLOC	MLOC_62602.4	1688	2e-24	694 - 753	100	60 / 60	plus	ABC03409 ABC03410
MLOC	MLOC_62602.5	1658	2e-24	691 - 750	100	60 / 60	plus	ABC03409 ABC03410
JLOC1	JLOC1_40981.4	3112	8e-25	694 - 753	100	60 / 60	plus
JLOC1	JLOC1_40981.3	1809	8e-25	694 - 753	100	60 / 60	plus
JLOC1	JLOC1_40981.2	1800	8e-25	694 - 753	100	60 / 60	plus
Harvest21	ABC03410	1492	3e-25	859 - 918	100	60 / 60	plus	ABC03410
Harvest35	U35_1254	1519	3e-25	886 - 945	100	60 / 60	plus

Contig Sequence (1519 bp)

>U35_1254 1519 Hv_44K_v2
GAGGGGAGCACGAGGTGTACGGCCAGGAGATCCCCGTGGACGGCGACATGGAAGGCACCG
ACGTCGACATGGCCGCTGCCGGAGACGACGCAGCAAAGGAGCTCGACGAGATGAAGCGTA
GGCTCAAGGAGATGGAGGAGGAGGCCGCCGCCCTGCGCGACATGCAGGCCAAGGTCGCCA
AGGAGATGCAAGGAGGAGATGCCAATGCGTCTACAGCTGAGGCAAAGGAGCAAGTGGATG
CTCGCTCTGTTTATGTTGGAAATGTAAGATTTCCTAATCTCTCTTTTTGTCACACGCATG
CATGGTCGGTGGTTGCACGCATGCCAAATGTTGGGTCTGTATGATGGTAGATGTACACGT
GTGTTGCCAAGGTATACATATAGTTGTTGGGCTATATAGCTTAAAAGGTGTGGATATATG
GACTTCATTAGATATTGGATACTGACTGCTAGTTAGTCGAAAATGTCTTTTGTGCACTTA
ACTTAGATAATTGACAGTTATGCCAAAAGGTCTGATTTATTCTCAACTTCTCTTATGTTC
AAATGTTCAATACATATTGTGCAGTGAATCCTGAAGTTGTTCTGTTCCTACCTATCTTTG
CTGTTTCGCCGTCAATAAATAGCTAGTTCATAACTTCTTTATATGCTATTGTTCCTAATT
GTAGTTCATGCTTAAGGCTGTTCCTCACAGCAATCGCTAATTTCCATTTGCAATTATGCA
CTATTGTATTGATTTGTTTTTTCCTTTGTCGCCATCATTTGCTAGTTTGCTAAAATCCCA
GAAAAGGTATATTACTATTTTTATGTTGGAATGTCCTTCTGTTCTAATGCTCTGGTACAT
TAATTGTACAATGTGATGGTCGCAGGGGTAGGTTTTTGATATCAAGTACTTGCTGTTGGT
TCAATACCATCTCGTGTTGTGGTATATATTAGTAGATAGAGAAAAAAATCCCTGGGAAAA
TATATCATTGAAAAAAAGGAAAGAAAAAAGGGGGAAAAAGAAAAAAAAAAAAAAGAAAAA
CGAGTTTATATAGTTTAGGGTTAGTTACCTCCCTGAAGAAGTGAAGGAAGTCTAGAAATC
TGCTGTACAGACTTGCAAATGGCGCTTGAGACTCGGACCTGCATGTGATGTGGTGTGATT
CTAGACCGCTGATCCAGTGAGAATCACCTGAACAGTGCATAGGTATGACATGTAAGTGTA
TCATCAGAATGGAGCCTTATGTTGACTGTTCTTTTGCTCATTCTGAATGTGCGCTTGCTT
ACCGCTCCTCTCCTCTTTGTTCTCCCTCTTTTCACTTCAGAACTGTCCATGTGCTACCGA
AACCCATATTCATGCTACTCCTGTTCTCTCTCTCTATGGNCTATTTTTCATCTTTTTCTA
AACGTGATGTCCACTTCTGCATTAGCATAAAAGTGTTTCTAATGGTTTTCGAGGATTACA
TGTAACTCAAAATGCAAGTAAAGTTGCCCAACATTATGTACTTCCCATAGGGCTGGATTT
ATATACAGAATTGCAGAAG

Homology of Contig U35_1254 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None