barSeed - Barley Seed Development Database

Probe CUST_13876_PI390587928

Source Contig U35_1255

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13876_PI390587928	Hv_44K_v2	GAATTTGTTGAAGCAGAAGCTATTCAGGAAGCTGTCAAGCTGAGTGAGTCAGAGCTTCAT	475	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.371	0.436	0.973	1.719	1.079	1.382
Raw	920.755	1717.388	3295.790	9470.857	2003.443	2837.983

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16972.1	1070	2e-24	543 - 602	100	60 / 60	plus	ABC03412 ABC52720
MLOC	AK250020.1	979	7e-23	481 - 540	98	59 / 60	plus	ABC03409 ABC03412 ABC52720
JLOC1	JLOC1_11720.2	843	8e-25	276 - 335	100	60 / 60	plus
JLOC1	JLOC1_11720.1	1001	8e-25	434 - 493	100	60 / 60	plus
Harvest21	ABC03412	1021	3e-25	476 - 535	100	60 / 60	plus	ABC03412
Harvest21	ABC52720	500	6e-22	433 - 492	97	58 / 60	minus	ABC52720
Harvest35	U35_1255	1021	3e-25	476 - 535	100	60 / 60	plus

Contig Sequence (1021 bp)

>U35_1255 1021 Hv_44K_v2
CAGCCCAAGTCCCCGAGACACAAATCCAAATCGCCCTCGCGTTAGGTTAGGCCGAGGCGA
GTAGATTGGACTTGGAGCTCAGCACGCGGCGGCCATGGAGGACGAGGAGCACGAGGTGTA
CGGCCAGGAGATCCCCGTCGACGCCGAGGACGTCGAGATGGGCGCCGGGGGCGACGACGC
CGCCAAGCTGCACGAGCTCGACGAGATGAAGCGCCGTCTCAAGGAGATGGAGGAGGAGGC
CGCCGCCCTCCGCGAGATGCAGGCCAAGGTCGCCAAGGAGATGCAAGGCGGAGATCCTAA
TGCGACCACATCTGAAGCAAAAGAAGAGATGGATTCTCGTTCTGTTTTTGTTGGAAATGT
TGACTATGCATGCACTCCAGAAGAAGTGCAGCAGCATTTTAATTCTTGCGGAACCGTCAA
CCGAGTGACTATCCTGACTGACAAGTTTGGGCAGCCTAAAGGTTTTGCTTATGTTGAATT
TGTTGAAGCAGAAGCTATTCAGGAAGCTGTCAAGCTGAGTGAGTCAGAGCTTCATGGTCG
GCAAATCAAGGTTGCACCGAAGCGAACTAACGTTCCTGGGTTGAAGCAGCCCCGAGGGGG
CCGAGGATTCAACCCATATGGCGGCCACCCCTACATGAGGCCATATCCACCACCGTTTTA
CAATCCTTATGGTGGTTATGGGAGAGCTCCCAGGTTCCGCCGACCGCGCAGGCCCTTCTA
TTGAAGTTCTTGCTCTAATGGAATTTTGTCAACACATGACAAAACTAGTCTTCGATCGAG
CTTAAGCCAGTCAGAGAACTCAAATCCTTATACCGTGTTTTCATTATTTCACAGTGGAAT
ATGTGATGGTTGTTGTGTAATCTACTCTGTTGTGTTGAAAAATGTGTAAGCCATTACATG
CATCAGCATTATGTACTATTTGACTTAGCAATCAAGTCATCCGATATACTATGCCTGGAA
CTGGATTAAAAAAAAAAAAAAAAAGGAGTTATTATTCTGCGTGTAAAAAAAAAAAAAAAA
A

Homology of Contig U35_1255 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11620.1	205	1e-89	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi1g45640.1	210	8e-101
Arabidopsis v10	AT5G65260.1	220	2e-63	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:26080501-26082984 REVERSE LENGTH=220