barSeed - Barley Seed Development Database

Probe CUST_13868_PI390587928

Source Contig U35_19913

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13868_PI390587928	Hv_44K_v2	ATGTAACATTTCCACACATTCTGAATCCTGGTATAGTTCCTTTAAGGAGGAACGTTATGT	1011	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.754	1.613	1.185	0.854	0.321	0.306
Raw	1708.540	2535.527	1591.813	1819.697	241.514	246.063

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6154.1	1100	2e-24	1023 - 1082	100	60 / 60	plus	None
JLOC1	JLOC1_3995.1	1213	4e-23	1082 - 1141	98	59 / 60	plus
Harvest35	U35_19913	1074	3e-25	1012 - 1071	100	60 / 60	plus

Contig Sequence (1074 bp)

>U35_19913 1074 Hv_44K_v2
CTCCTACCCCGCGCCGCCTACTTGGTTTCCTCCTCTTCCCCTCCACCGCCAGCCCCTGCC
GCCGCCGCGCAACCCAACAACCCCCGGGGCAAGCGAAGCAGCAGCTATCCAAGCCTACAA
GGGCTCGGCGAGCGATGTCGGCGGCGGCGGCGCCGGCGCCGATCGGCCTGTCGTGGGCGC
CCCAGCTGCCTTCCCTGGCGGCGGCCGGCGGCAGCAAGAAGGGCTCGGCGCCGACCCCGA
GCATTGACGCGCAGGATTCCCTCTGGAAGCCCAGCAACGAGCTCGTGGACGGGCTCTACG
TGCCCCCGAGGGACCCCAGGAAGGTCAACAAGATGGCGAGGAAGAACGTCAAGGACACCG
CCGGCAAGGGCTGGTTCGACATGCCGGCGCCGAGCATCACTCCCGAGTTGAAGAAAGACC
TTGAGATTTTGCAGCTGAGGCATGTAATGGACCCTAAAAGGCATTTCAAGAGGTCTGGTA
AATCCAAGGCTCTTCCGAAGTATTTCCAAGTTGGAACAGTTATTGAGCCTGCATCTGAGT
ACTACTCAAGTAGGCTGACAAAGCACGAACGGAAGCAGACCTTGGTTGATGAGCTGTTAT
CTGACCAAAAACTCAAGAACTACAGGATGCGTAAGGTAAGGGAAATTCAGGAGGCCCGGA
CGCCCGGAGGTAACCAGAAGTGGAAGAACAAGGGCAAGCAAACGTTCAAAAGGGCCAAGG
ACAGGCGGAAATAGGATCATTGTAAAACAAGGAAGAATAGAAGAACGGAGCCAAAGAGAA
ATGGGCGAGCACGGCTATAGGTTGTGCACTCTAGTGTAATGTGGTGAATTCATGTAACTG
AACGTATGAAACTTTTCTCCCCGCACTTCGGGCGTTGAGATCAGAGTTTGAGGGGATGAT
GGTCAAAGCATTGTAGTATCTGAACTTGAGTCTGGCAGGATGTTTTCTCACACAAAAAAA
CTGATCTTGTGGATGTTCATCTACTGATCTGCAACAAAAGAGCACGGAAGTATGTAACAT
TTCCACACATTCTGAATCCTGGTATAGTTCCTTTAAGGAGGAACGTTATGTGCC

Homology of Contig U35_19913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49780.1	196	3e-95	protein\|expressed protein
Brachypodium v1_2	Bradi3g57060.1	198	7e-92
Arabidopsis v10	AT5G30495.2	196	6e-57	Fcf2 pre-rRNA processing protein \| chr5:11380190-11381391 FORWARD LENGTH=196