barSeed - Barley Seed Development Database

Probe CUST_13859_PI390587928

Source Contig U35_1262

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13859_PI390587928	Hv_44K_v2	GTTGAAATTGCTGTGCATCAGGTACTGGTATAATGAGTTCTTGTGGTGCCTCAGTGCATC	1019	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.542	2.478	1.090	0.888	0.419	0.472
Raw	12135.590	12968.937	5052.757	6455.830	1078.439	1322.502

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75724.1	1527	2e-24	1203 - 1262	100	60 / 60	plus	ABC03618
JLOC1	JLOC1_50508.2	1672	8e-25	1432 - 1491	100	60 / 60	plus
JLOC1	JLOC1_50508.1	1431	8e-25	1191 - 1250	100	60 / 60	plus
Harvest35	U35_1262	1123	3e-25	1020 - 1079	100	60 / 60	plus

Contig Sequence (1123 bp)

>U35_1262 1123 Hv_44K_v2
GCTTTTTCTTTCCGCCGCGGCAACTGTGAGCCGGCCCGATCGAGAGACCGCCATAATTCA
TTCCATCCATCCGTCCGTCCGTCCTCTGCCGAGTATATAAGCGCGGCCATTGGGGGCGCT
CGTGGGGTTGTTCGTCGCATCGTCGCATCGGGCGCAGGGGGGCAGGCAGAGATCAGATCG
GGGGAGAGGGAGACCACGGCGACGGCGGCGACCATGTTCAGCGGGACGCAGCAGAAGTGC
AAGGTGTGCACCAAGACGGTCTACCCCATGGACCAGCTCTCCACCGACGGCGCCGTCTTC
CACCGCGCCTGCTTCAAGTGCCACCACTGCAAGTCCACCCTCTCCTTTAGCAGCTACTCC
TCGTTCGAAGGGGTGCCCTACTGCAAGCCCCATTTCGCGCAGCTGTTCAAGGAGACCGGG
AGCTACAATAAGAGCTTCCAGTCACAATCCCCCGCGAAATCTGCAACGGACAAGTTGACT
CCTGAGCTGACTAGATCGCCAAGCAAAGCTGCTGGCATGTTTTCTGGAACGCAGGACAAG
TGCGCCACTTGTGGTAAAACAGCATACCCTCTTGAGAAGGTGACAGTTGAAGAGAAGTCT
TACCACAAGTCCTGCTTCAAATGCTCTCATGGAGGCTGCGCCCTCTCGCCCTCCAATTAC
GCGGCTTTGGAAGGCATCCTCTACTGCAAGCACCATTTCTCACAGCTTTTCAAGGAGAAG
GGGAGCTACAACCATCTGATCAAGTGCGCATCGGTCAAGCGCGCAGCAGAGGCGCAAACC
GCACAGGCCGCGGCACAAACAGCACAGGCGGCTGCTGAATCCTCCTGATTATGCTGCCAT
CTTTAAAGTGGGCTTTGAGGCTGGAAGTTTGGAAGCCTTGCTCTTTATTTACGATTGTAA
CCTGCTGTATGCTGTGTTCAAGCTCCGGGGATACCAGGACCTATCAATTTCGTATCTCCT
TGTGTGCTAGCTGGATCACGTTGTTGAACCATGGAGTTGATGTCATTCCGAAAGAAACTG
TTGAAATTGCTGTGCATCAGGTACTGGTATAATGAGTTCTTGTGGTGCCTCAGTGCATCA
ATAAAAAAAAAAAAAAAAAGAGCACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1262 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15940.1	197	1e-112	protein\|OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed
Brachypodium v1_2	Bradi1g67100.1	196	1e-122
Arabidopsis v10	AT2G39900.1	200	1e-95	\| Symbols: WLIM2a \| GATA type zinc finger transcription factor family protein \| chr2:16659136-16660267 FORWARD LENGTH=200